NAU2265, NAU2265 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2265
Genbank IDDT048657
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048657.1
Source TypeEST
Repeat MotifACAT(10)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2265_F: CAATCACATTGATGCCAACT
Primer 2NAU2265_R: CGGTTAAGCTTCCAGACATT
Product Length224
PolymorphismP_ NAU2265
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048657
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:354358..354577 +
A02chromosomeA02:90051651..90051886 -
CM018217.1chromosomeCM018217.1:319507..319730 +
CM018203.1chromosomeCM018203.1:99541292..99541507 -
D5_02chromosomeD5_02:294531..294734 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:442840..443071 +
scaffold1977.1supercontigscaffold1977.1:310678..310897 +
At_chr4chromosomeAt_chr4:23362330..23362565 -
D03chromosomeD03:311898..312121 +
A02chromosomeA02:83057705..83057940 -
Ghir_D03chromosomeGhir_D03:315843..316062 +
Ghir_A02chromosomeGhir_A02:107705898..107706133 -
D03chromosomeD03:317494..317713 +
A02chromosomeA02:107903525..107903760 -
D03chromosomeD03:313033..313252 +
A02chromosomeA02:105363308..105363543 -
D03chromosomeD03:317868..318087 +
A02chromosomeA02:103944428..103944663 -
At02chromosomeAt02:89471097..89471312 -
scaffold28823supercontigscaffold28823:59171..59394 -
scaffold23613supercontigscaffold23613:146546..146761 -
Gbar_D03chromosomeGbar_D03:312320..312543 +
Gbar_A02chromosomeGbar_A02:99834962..99835177 -
D03chromosomeD03:319642..319861 +
A02chromosomeA02:101772449..101772664 -
CM017625.1chromosomeCM017625.1:317721..317940 +
CM017611.1chromosomeCM017611.1:104749307..104749518 -
CM017651.1chromosomeCM017651.1:371946..372161 +
CM017637.1chromosomeCM017637.1:109541231..109541466 -
CM017703.1chromosomeCM017703.1:341640..341851 +
CM017689.1chromosomeCM017689.1:101923852..101924055 -
D03chromosomeD03:345875..346094 +
A02chromosomeA02:107850525..107850760 -
Chr02chromosomeChr02:92559455..92559678 -
Chr02chromosomeChr02:102160497..102160728 -
Chr02chromosomeChr02:305233..305436 +
Chr_03chromosomeChr_03:276812..277023 +
Chr03chromosomeChr03:307019..307226 +
Chr03chromosomeChr03:251328..251543 +
Chr03chromosomeChr03:225119..225330 +
Chr03chromosomeChr03:295517..295740 +
F02chromosomeF02:277075..277294 +
Chr03chromosomeNAU2265:4..550 .
Chr03:302127..302653 +
Chr3chromosomeNAU2265:4..550 .
Chr3:25607876..25608402 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048657.1DT048657.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch02_At.02N/A99.44NAU2265View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch02_At.02N/A74.96NAU2265View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A7NAU2265View
4Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A86.8NAU2265View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A0NAU2265View
6Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A136.9NAU2265View
7Prema x 86-1, RIL (2015)AD_ch02_At.02N/A4.04NAU2265View
8Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A99.6NAU2265View
9GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A0NAU2265View
10GX1135 x GX100-2, RIL (2016)AD_ch04_At.04N/A129.2NAU2265View
110-153 x sGK9708, RIL (2016)AD_ch02_At.02N/A59.6NAU2265View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A175.6NAU2265View
13CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A1.3NAU2265View
140-153 x sGK9708, RIL (2017)AD_ch02_At.02N/A3.82NAU2265View
15TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A3.67NAU2265aView
16TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A3.7NAU2265aView
17TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A0.32NAU2265bView
18TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A126.1NAU2265bView
19TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A5.4NAU2265-380View
20TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A109.46NAU2265-380View
21TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A109.2NAU2265-380View
22Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A6.4NAU2265/210t(C2)View
23CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A119.4NAU2265View
24TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A3.66NAU2265aView
25TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A126.1NAU2265bView
Sequence
>NAU2265 ID=NAU2265; Name=NAU2265; organism=Gossypium hirsutum; type=genetic_marker; length=224bp
CAATCACATTGATGCCAACTGAACGAGNCACATGATGCACACTTCACACA
CATGTACACACTTGCACAGACATACATACATACATACATACATACATACA
TACATACATACAACGACGCACATTTTTTGCAAACTAATGCCTCAACAAAG
AACTAAGAACAGAAGAAATCTGCAATGGGTACACATGGTGATTTACGTCG
TAAGAATGTCTGGAAGCTTAACCG