NAU2218, NAU2218 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2218
Genbank IDDT048008
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048008.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2218_F: CTCATTCTTCACAACTTCCAAC
Primer 2NAU2218_R: TAAATTCTGGGGAGACGAAG
Product Length124
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048008
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:6943787..6943911 +
A01chromosomeA01:9208577..9208688 +
CM018215.1chromosomeCM018215.1:7209552..7209675 +
CM018202.1chromosomeCM018202.1:8382992..8383103 +
D5_01chromosomeD5_01:6757752..6757893 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9598827..9598938 +
D10_01chromosomeD10_01:53463344..53463469 -
At_chr2chromosomeAt_chr2:5109716..5109839 +
scaffold3720_D01supercontigscaffold3720_D01:103907..104031 +
A01chromosomeA01:7993050..7993161 +
Ghir_D01chromosomeGhir_D01:7642489..7642612 +
Ghir_A01chromosomeGhir_A01:8395971..8396082 +
D01chromosomeD01:7455860..7455984 +
A01chromosomeA01:8055311..8055422 +
D01chromosomeD01:7106817..7106940 +
A01chromosomeA01:8551620..8551731 +
D01chromosomeD01:7517276..7517399 +
A01chromosomeA01:8364658..8364769 +
At01chromosomeAt01:7594825..7594936 +
scaffold1265supercontigscaffold1265:219286..219397 +
scaffold507supercontigscaffold507:404561..404684 -
Gbar_D01chromosomeGbar_D01:7940718..7940841 +
Gbar_A01chromosomeGbar_A01:8420647..8420758 +
D01chromosomeD01:7661293..7661416 +
A01chromosomeA01:8078105..8078216 +
CM017623.1chromosomeCM017623.1:7388527..7388650 +
CM017610.1chromosomeCM017610.1:9405261..9405372 +
CM017649.1chromosomeCM017649.1:8214756..8214879 +
CM017636.1chromosomeCM017636.1:8573017..8573128 +
CM017701.1chromosomeCM017701.1:7575323..7575448 +
CM017688.1chromosomeCM017688.1:8578085..8578196 +
D01chromosomeD01:7773989..7774113 +
A01chromosomeA01:8562379..8562490 +
Chr01chromosomeChr01:8536686..8536797 +
Chr01chromosomeChr01:9409045..9409156 +
Chr01chromosomeChr01:6746739..6746884 +
B_01chromosomeB_01:8770762..8770887 +
Chr02chromosomeChr02:7308789..7308914 +
Chr_02chromosomeChr_02:6754581..6754706 +
Chr02chromosomeChr02:7529601..7529714 +
Chr02chromosomeChr02:7581995..7582098 +
E01chromosomeE01:10059851..10059973 +
Chr01chromosomeChr01:188618893..188619024 -
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048008.1DT048008.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A0NAU2218View
2GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A77NAU2218View
Sequence
>NAU2218 ID=NAU2218; Name=NAU2218; organism=Gossypium hirsutum; type=genetic_marker; length=124bp
CTCATTCTTCACAACTTCCAACTACATTAGTATATTTATAATTGATAACC
ATATATATATATATTAACTAAGTATATTATTTTTAACAAAAACATCTGGT
TTGGCTTCGTCTCCCCAGAATTTA