NAU2186, NAU2186 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2186
Genbank IDDT047410
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047410.1
Source TypeEST
Repeat MotifGGGAA(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2186_F: CAAAACGCTTTCGAATACAA
Primer 2NAU2186_R: GATTACACCGCAGAGTCCTT
Product Length160
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:13282634..13282780 +
A07chromosomeA07:16348293..16348452 +
CM018208.1chromosomeCM018208.1:16276226..16276373 +
D5_07chromosomeD5_07:12576250..12576396 +
KI_07chromosomeKI_07:29371923..29372070 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:14923436..14923571 +
D10_07chromosomeD10_07:41567303..41567460 -
CM016620.1chromosomeCM016620.1:94113419..94113566 -
scaffold1775.1supercontigscaffold1775.1:152968..153127 -
Dt_chr1chromosomeDt_chr1:46878825..46878971 -
D07chromosomeD07:12684051..12684197 +
A07chromosomeA07:15534308..15534467 +
Ghir_D07chromosomeGhir_D07:13115910..13116056 +
Ghir_A07chromosomeGhir_A07:16616190..16616348 +
D07chromosomeD07:12559145..12559291 +
A07chromosomeA07:15903725..15903884 +
D07chromosomeD07:13069818..13069964 +
A07chromosomeA07:16639131..16639290 +
D07chromosomeD07:12962540..12962686 +
A07chromosomeA07:16613573..16613732 +
scaffold87supercontigscaffold87:230056..230203 -
scaffold22317supercontigscaffold22317:80449..80589 -
Gbar_D07chromosomeGbar_D07:13139660..13139800 +
Gbar_A07chromosomeGbar_A07:16229466..16229613 +
D07chromosomeD07:12831458..12831598 +
A07chromosomeA07:16285273..16285420 +
CM017629.1chromosomeCM017629.1:13110278..13110424 +
CM017616.1chromosomeCM017616.1:16163816..16163969 +
CM017655.1chromosomeCM017655.1:13283185..13283331 +
CM017642.1chromosomeCM017642.1:16229820..16229979 +
CM017707.1chromosomeCM017707.1:12995698..12995844 +
CM017694.1chromosomeCM017694.1:16527593..16527740 +
D07chromosomeD07:13281614..13281760 +
A07chromosomeA07:16769985..16770144 +
Chr07chromosomeChr07:17355672..17355819 +
Chr07chromosomeChr07:17612365..17612500 +
Chr07chromosomeChr07:41002527..41002673 -
B_07chromosomeB_07:16772057..16772222 +
Chr01chromosomeChr01:12960492..12960638 +
chr01chromosomechr01:11075323..11075469 +
Chr01chromosomeChr01:12748336..12748482 +
Chr01chromosomeChr01:10515053..10515205 +
Chr01chromosomeChr01:10378442..10378594 +
E07chromosomeE07:74946920..74947103 -
F07chromosomeF07:15091765..15091918 +
Chr07chromosomeChr07:28301794..28301947 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047410.1DT047410.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch07_At.07N/A65.64NAU2186View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A36.4NAU2186View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch07_At.07N/A38.66NAU2186View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A81.08NAU2186View
5AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A99NAU2186View
6AD-genome wide Reference Map (2009)AD_ch07_At.07N/A136NAU2186View
7H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A30.5NAU2186View
8(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.07N/A116.4NAU2186View
9LMY22 x LY343, RIL (2016)chr.16N/A98.9NAU2186View
10LMY22 x LY343, RIL (2020)D07N/A144.61NAU2186View
11Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A102.6NAU2186aView
12Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A118.6NAU2186bView
13TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A25.5NAU2186-300View
14TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A88.98NAU2186-300View
15TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A37.8NAU2186-300View
16TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A51.5NAU2186-360View
17TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A52.23NAU2186-360View
18TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A71.5NAU2186-360View
19TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A63NAU2186-150View
20TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A62.53NAU2186-150View
21H16 x T586, F2 (2009)AD_ch16_Dt.07N/A62.6NAU2186-150View
22TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A69.1NAU2186-150View
23PD 94042 x (AD)4-08, F2 (2016)AD_ch07_At.07N/A170.6NAU2186View
Sequence
>NAU2186 ID=NAU2186; Name=NAU2186; organism=Gossypium hirsutum; type=genetic_marker; length=160bp
CAAAACGCTTTCGAATACAAAAGAACACTACCACTTAAAAGCAAAATAAA
TAAAAATAGAAAGAGATAGGGAAAGGGAAGGGGAAGGGGAAGGGGAAGGG
GAAGGGGGGCTTTAAGTTTTAAGGCACTCCCTAGATTCACAAGGACTCTG
CGGTGTAATC