NAU2165, NAU2165 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2165
Genbank IDDT047071
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047071.1
Source TypeEST
Repeat MotifTAA(5); CAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2165_F: TAAATTTTGAGATGGCAGCA
Primer 2NAU2165_R: CAAGGTGAAGGCAAAGAGAT
Product Length205
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047071
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:29095933..29096116 -
A12chromosomeA12:57489116..57489320 -
CM018215.1chromosomeCM018215.1:27641592..27641778 -
CM018202.1chromosomeCM018202.1:42406757..42406961 -
D5_01chromosomeD5_01:26432137..26432345 -
KI_01chromosomeKI_01:15274864..15275069 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:27209096..27209300 +
D10_01chromosomeD10_01:33738049..33738257 +
CM016614.1chromosomeCM016614.1:49604179..49604386 +
Dt_chr2chromosomeDt_chr2:28752504..28752687 -
At_chr1chromosomeAt_chr1:24319895..24320099 -
At_chr1chromosomeAt_chr1:24312200..24312404 -
scaffold106_A01supercontigscaffold106_A01:390061..390265 +
D01chromosomeD01:27287955..27288138 -
Ghir_D01chromosomeGhir_D01:28520687..28520869 -
Ghir_A01chromosomeGhir_A01:44804462..44804666 -
D01chromosomeD01:27859678..27859861 -
A01chromosomeA01:44389122..44389326 -
D01chromosomeD01:28074996..28075179 -
A01chromosomeA01:44702349..44702553 -
D01chromosomeD01:28310972..28311155 -
A01chromosomeA01:43941324..43941528 -
scaffold14208supercontigscaffold14208:6955..7159 +
scaffold10839supercontigscaffold10839:19595..19781 +
Gbar_D01chromosomeGbar_D01:28228390..28228576 -
Gbar_A01chromosomeGbar_A01:42565407..42565611 -
D01chromosomeD01:27898967..27899153 -
A01chromosomeA01:42772372..42772576 -
CM017610.1chromosomeCM017610.1:47212263..47212468 +
CM017623.1chromosomeCM017623.1:28155374..28155560 -
CM017649.1chromosomeCM017649.1:29552814..29553000 -
CM017636.1chromosomeCM017636.1:46743965..46744170 -
CM017688.1chromosomeCM017688.1:42878063..42878268 -
D01chromosomeD01:28844217..28844400 -
A01chromosomeA01:45788072..45788276 -
Chr01chromosomeChr01:54326702..54326907 +
Chr01chromosomeChr01:27769056..27769260 +
Chr01chromosomeChr01:21666860..21667068 -
B_01chromosomeB_01:47743837..47744040 -
Chr02chromosomeChr02:27281614..27281822 -
chr02chromosomechr02:23970370..23970578 -
Chr_02chromosomeChr_02:21184076..21184284 -
Chr02chromosomeChr02:27214853..27215061 -
Chr02chromosomeChr02:24071619..24071827 -
Chr02chromosomeChr02:18041982..18042188 -
Chr02chromosomeChr02:22652697..22652905 -
E01chromosomeE01:46305378..46305589 +
F01chromosomeF01:78395687..78395893 +
F01chromosomeF01:76009037..76009243 +
F01chromosomeF01:76024896..76025100 +
Chr01chromosomeChr01:117177707..117177911 -
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047071.1DT047071.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A63.49NAU2165View
2Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A104.92NAU2165View
3AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A100NAU2165View
4DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A51.9NAU2165View
5DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A51.9NAU2165View
6Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A80.4NAU2165View
7DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A23.23NAU2165View
8DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A23.23NAU2165View
9TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A56.4NAU2165View
10(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.01N/A70.7NAU2165View
11TM-1 x Hai-7124, BC1 (2007)AD_ch15_Dt.01N/A63.3NAU2165-210View
12TM-1 x Hai-7124, BC1 (2008)AD_ch15_Dt.01N/A61.82NAU2165-210View
13TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A62.9NAU2165-210View
14CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A59.96NAU2165View
15TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A56.4NAU2165View
Sequence
>NAU2165 ID=NAU2165; Name=NAU2165; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
TAAATTTTGAGATGGCAGCAACAGAAATCTAATTTANAAATTTGGAAGAA
AAATTATAATGAAAAGAAAAAAACTGGTCAATTTCTTTAAACATGATGGA
TATTATTCTCATCCTGTTCTAACTCTTTTGTTGTAATAATAATAATAAAT
GAAAATTGAAGCCTCCTTTCGTCAAACTGACCTCAATCTCTTTGCCTTCA
CCTTG