NAU2152, NAU2152 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2152
Genbank IDDT046853
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT046853.1
Source TypeEST
Repeat MotifAT(7); ATA(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2152_F: GAAAACAAGGCACTTGAACC
Primer 2NAU2152_R: GATCGATCAAAACCGGTAAC
Product Length198
PolymorphismP_ NAU2152
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT046853
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:68772351..68772573 +
A11chromosomeA11:109886330..109886527 +
CM018212.1chromosomeCM018212.1:109152324..109152527 -
D5_11chromosomeD5_11:3796731..3796953 -
KI_11chromosomeKI_11:52359830..52360034 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5341780..5341999 -
D10_11chromosomeD10_11:65053509..65053736 -
CM016624.1chromosomeCM016624.1:138863822..138864028 +
scaffold1984.1supercontigscaffold1984.1:319460..319684 +
At_chr1chromosomeAt_chr1:3847152..3847349 -
D11chromosomeD11:61712786..61713008 +
A11chromosomeA11:88794811..88795008 +
Ghir_D11chromosomeGhir_D11:68670739..68670961 +
Ghir_A11chromosomeGhir_A11:118809408..118809605 +
D11chromosomeD11:66956705..66956927 +
A11chromosomeA11:117178358..117178555 +
D11chromosomeD11:68153055..68153279 +
A11chromosomeA11:115025174..115025371 +
A11chromosomeA11:111696831..111697028 +
D11chromosomeD11:65237406..65237628 -
At11chromosomeAt11:93132657..93132860 +
scaffold16644supercontigscaffold16644:123231..123434 +
scaffold28009supercontigscaffold28009:19197..19421 -
scaffold28009supercontigscaffold28009:14765..14989 -
Gbar_D11chromosomeGbar_D11:64907222..64907446 +
Gbar_A11chromosomeGbar_A11:108738394..108738597 +
D11chromosomeD11:67741499..67741721 +
A11chromosomeA11:112008667..112008870 +
CM017633.1chromosomeCM017633.1:66864296..66864518 +
CM017620.1chromosomeCM017620.1:115933212..115933407 +
CM017659.1chromosomeCM017659.1:69299882..69300108 +
CM017646.1chromosomeCM017646.1:122252542..122252743 -
CM017711.1chromosomeCM017711.1:64847365..64847593 +
CM017698.1chromosomeCM017698.1:109654237..109654434 +
D11chromosomeD11:68256831..68257053 +
A11chromosomeA11:119466127..119466324 -
Chr11chromosomeChr11:127021770..127021979 +
Chr11chromosomeChr11:125967725..125967944 +
B_11chromosomeB_11:97426471..97426696 +
Chr07chromosomeChr07:65642757..65642979 +
Chr07chromosomeChr07:67020646..67020892 +
Chr07chromosomeChr07:41644689..41644911 +
Chr07chromosomeChr07:34907184..34907545 +
Chr07_6373553chromosomeChr07_6373553:7102..7330 -
E11chromosomeE11:110467072..110467310 +
F11chromosomeF11:95634464..95634685 +
Chr11chromosomeChr11:66675..66891 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT046853.1DT046853.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A38.7NAU2152View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A37.22NAU2152View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch11_At.11N/A2.14NAU2152View
4AD-genome wide Reference Map (2009)AD_ch11_At.11N/A181NAU2152View
5AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A52NAU2152View
6AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A9NAU2152View
7IL138-A11-3 x TM-1, F2:3 (2014)AD_ch11_At.11N/A0NAU2152View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch06_At.06N/A0NAU2152View
9GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A22.3NAU2152View
10GX1135 x GX100-2, RIL (2016)AD_ch11_At.11N/A3.8NAU2152View
11(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.11N/A35NAU2152View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A229.4NAU2152View
13TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A141.61NAU2152aView
14TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A144.8NAU2152aView
15TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A116.09NAU2152bView
16TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A128NAU2152bView
17TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A25.5NAU2152-210View
18TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A25.51NAU2152-210View
19TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A136.2NAU2152-210View
20TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A28.8NAU2152-170View
21TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A28.63NAU2152-170View
22H16 x T586, F2 (2009)AD_ch16_Dt.07N/A28.6NAU2152-170View
23TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A102.4NAU2152-170View
24TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A79.6NAU2152-230View
25TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A38.46NAU2152-230View
26TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A78.3NAU2152-230View
27GB713 x Nem-X, F2 (2011)AD_ch21_Dt.11N/A189.3NAU2152_224View
28TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A144.81NAU2152aView
29TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A128NAU2152bView
30PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A6.4NAU2152bView
31PD 94042 x (AD)4-08, F2 (2016)AD_ch21_Dt.11N/A5.7NAU2152aView
Sequence
>NAU2152 ID=NAU2152; Name=NAU2152; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
GAAAACAAGGCACTTGAACCACATTAGAATCAATATAACTCATATATATA
TATATAACCTACAAAACAATATACAGTTCACATTAATGGTAAAAAGAAGA
CCAGATTTTCATGACTCAACAGTGATGTTTCCGTTACTCGGCTTCGTGAT
TTTCGGAGCAGCAGCTTTCATTGTTGTCGTTACCGGTTTTGATCGATC