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Marker Overview
Name | NAU2121 |
Genbank ID | DR044202 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | 7235 7235
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Source Sequence | DR044202.1
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Source Type | EST |
Repeat Motif | AG(25) |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU2121_F: CCACTTCTCCCTCATTGTCT |
Primer 2 | NAU2121_R: CGCAACAGTCACAACCAC |
Product Length | 249 |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Germplasm
Stock Name | Type |
7235 | accession |
7235 | accession |
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch05_At.05 | N/A | 124.24 | NAU2121 | View |
2 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch05_At.05 | N/A | 97.7 | NAU2121 | View |
3 | Hai-7124 x Junmian-1, F2 (2008) part | AD_ch05_At.05 | N/A | 83.8 | NAU2121 | View |
4 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch05_At.05 | N/A | 54.7 | NAU2121 | View |
5 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch05_At.05 | N/A | 6.1 | NAU2121 | View |
6 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch05_At.05 | N/A | 96.6 | NAU2121 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 315 | NAU2121 | View |
8 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 177.67 | NAU2121 | View |
9 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 19 | NAU2121 | View |
10 | DH962 x Jinmian-6, F2 (2009) | AD_ch05_At.05 | N/A | 28.5 | NAU2121 | View |
11 | DH962 x Jinmian-6, F2 (2009) | AD_ch05_At.05 | N/A | 28.5 | NAU2121 | View |
12 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 112.5 | NAU2121 | View |
13 | DH962 X Ji Mian 5, F2 (2015) | AD_ch05_At.05 | N/A | 43.97 | NAU2121 | View |
14 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 21.4 | NAU2121 | View |
15 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch05_At.05 | N/A | 98.2 | NAU2121 | View |
16 | 0-153 x sGK9708, RIL (2016) | AD_ch05_At.05 | N/A | 160 | NAU2121 | View |
17 | DH962 x Ji Mian 5, RIL (2015) | AD_ch05_At.05 | N/A | 17.8 | NAU2121 | View |
18 | 0-153 x sGK9708, RIL (2017) | AD_ch05_At.05 | N/A | 82.11 | NAU2121 | View |
19 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 179.74 | NAU2121-250 | View |
20 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 192.1 | NAU2121-250 | View |
21 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 26.6 | NAU2121-250 | View |
22 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 21.38 | NAU2121 | View |
Sequence
>NAU2121 ID=NAU2121; Name=NAU2121; organism=Gossypium hirsutum; type=genetic_marker; length=249bp CCACTTCTCCCTCATTGTCTTTCTCTCCTACCTTCTTAGAATCTTCTTTG GATTTCTAAATTTTAACAAAAACCCTAGGCAAAACGAAAAAAAACCAATA ACGAAATTAAGTTTGAAATTCGTAGAGCCAAAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATTGTTTGTAATTGTT AGAGATGATGGATCTAAGGAGATTAGCGTNGGTGGTTGTGACTGTTGCG
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