NAU2121, NAU2121 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2121
Genbank IDDR044202
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044202.1
Source TypeEST
Repeat MotifAG(25)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2121_F: CCACTTCTCCCTCATTGTCT
Primer 2NAU2121_R: CGCAACAGTCACAACCAC
Product Length249
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:3784397..3784617 +
A05chromosomeA05:96984924..96985175 -
CM018218.1chromosomeCM018218.1:3209228..3209448 +
CM018206.1chromosomeCM018206.1:98930658..98930903 -
D5_04chromosomeD5_04:46940560..46940781 -
KI_06chromosomeKI_06:30433306..30433537 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:94802583..94802806 -
D10_04chromosomeD10_04:3180193..3180412 +
CM016617.1chromosomeCM016617.1:4633846..4634082 +
At_chr9chromosomeAt_chr9:57115044..57115265 +
At_chr9chromosomeAt_chr9:55982778..55982998 +
scaffold77834supercontigscaffold77834:213..433 -
A05chromosomeA05:88657186..88657437 -
Ghir_D04chromosomeGhir_D04:3392503..3392723 +
Ghir_A05chromosomeGhir_A05:105666821..105667071 -
D04chromosomeD04:3412873..3413093 +
A05chromosomeA05:107242701..107242954 -
D04chromosomeD04:3257932..3258152 +
A05chromosomeA05:105770409..105770658 -
D04chromosomeD04:3092318..3092538 +
A05chromosomeA05:103723639..103723891 -
scaffold12118supercontigscaffold12118:2280..2500 -
Gbar_D04chromosomeGbar_D04:3182868..3183088 +
Gbar_A05chromosomeGbar_A05:99026274..99026516 -
D04chromosomeD04:3221861..3222081 +
A05chromosomeA05:103916511..103916754 -
CM017626.1chromosomeCM017626.1:3318918..3319138 +
CM017614.1chromosomeCM017614.1:101340761..101341020 -
CM017640.1chromosomeCM017640.1:109859545..109859790 -
CM017704.1chromosomeCM017704.1:3416444..3416664 +
CM017692.1chromosomeCM017692.1:101867621..101867856 -
D04chromosomeD04:3746135..3746355 +
A05chromosomeA05:107550012..107550263 -
Chr04chromosomeChr04:3865654..3865869 +
Chr04chromosomeChr04:3840300..3840523 +
Chr04chromosomeChr04:47372884..47373105 -
B_02chromosomeB_02:80924416..80924635 -
Chr12chromosomeChr12:3388769..3388989 +
Chr_12chromosomeChr_12:2521279..2521499 +
Chr12chromosomeChr12:3369922..3370143 +
Chr12chromosomeChr12:3402378..3402598 +
Chr12chromosomeChr12:2313562..2313781 +
Chr12chromosomeChr12:3242080..3242300 +
F04chromosomeF04:3414086..3414319 +
Chr04chromosomeChr04:4256121..4256328 +
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044202.1DR044202.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A124.24NAU2121View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch05_At.05N/A97.7NAU2121View
3Hai-7124 x Junmian-1, F2 (2008) partAD_ch05_At.05N/A83.8NAU2121View
4Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A54.7NAU2121View
5(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A6.1NAU2121View
6Hai-7124 x Junmian-1, BC1 (2008) partAD_ch05_At.05N/A96.6NAU2121View
7AD-genome wide Reference Map (2009)AD_ch05_At.05N/A315NAU2121View
8TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A177.67NAU2121View
9(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A19NAU2121View
10DH962 x Jinmian-6, F2 (2009)AD_ch05_At.05N/A28.5NAU2121View
11DH962 x Jinmian-6, F2 (2009)AD_ch05_At.05N/A28.5NAU2121View
12Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A112.5NAU2121View
13DH962 X Ji Mian 5, F2 (2015)AD_ch05_At.05N/A43.97NAU2121View
14TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A21.4NAU2121View
15TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A98.2NAU2121View
160-153 x sGK9708, RIL (2016)AD_ch05_At.05N/A160NAU2121View
17DH962 x Ji Mian 5, RIL (2015)AD_ch05_At.05N/A17.8NAU2121View
180-153 x sGK9708, RIL (2017)AD_ch05_At.05N/A82.11NAU2121View
19TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A179.74NAU2121-250View
20TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A192.1NAU2121-250View
21TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A26.6NAU2121-250View
22TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A21.38NAU2121View
Sequence
>NAU2121 ID=NAU2121; Name=NAU2121; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
CCACTTCTCCCTCATTGTCTTTCTCTCCTACCTTCTTAGAATCTTCTTTG
GATTTCTAAATTTTAACAAAAACCCTAGGCAAAACGAAAAAAAACCAATA
ACGAAATTAAGTTTGAAATTCGTAGAGCCAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATTGTTTGTAATTGTT
AGAGATGATGGATCTAAGGAGATTAGCGTNGGTGGTTGTGACTGTTGCG