NAU2121, NAU2121 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2121
Genbank IDDR044202
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044202.1
Source TypeEST
Repeat MotifAG(25)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2121_F: CCACTTCTCCCTCATTGTCT
Primer 2NAU2121_R: CGCAACAGTCACAACCAC
Product Length249
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Germplasm
Stock NameType
7235breeding_germplasm
7235breeding_germplasm
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044202
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
NAU2121_FNAU2121_FGossypium hirsutumprimer
NAU2121_RNAU2121_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
NAU2121NAU2121Gossypium hirsutummarker_locus
NAU2121-250NAU2121-250Gossypium hirsutummarker_locus
NAU2121NAU2121-21.383Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044202.1DR044202.1Gossypium hirsutumsequence_feature


Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Agricultural University of Nanjing
Address:Weigang 1#, Nanjing, Jiangsu 210095
Country:China
Email:cotton@njau.edu.cn
Phone:+86 25 84395307
Fax:+86 25 84395307
Keywords:Genetics and Breeding
Last update:18-Mar-2011
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:3784397..3784617 +
A05chromosomeA05:96984924..96985175 -
CM018218.1chromosomeCM018218.1:3209228..3209448 +
CM018206.1chromosomeCM018206.1:98930658..98930903 -
D5_04chromosomeD5_04:46940560..46940781 -
KI_06chromosomeKI_06:30433306..30433537 +
Chr12chromosomeChr12:138215693..138215916 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:94802583..94802806 -
scaffold228supercontigscaffold228:206334..206555 -
D10_04chromosomeD10_04:3180193..3180412 +
CM016617.1chromosomeCM016617.1:4633846..4634082 +
At_chr9chromosomeAt_chr9:57115044..57115265 +
At_chr9chromosomeAt_chr9:55982778..55982998 +
scaffold77834supercontigscaffold77834:213..433 -
A05chromosomeA05:88657186..88657437 -
Ghir_D04chromosomeGhir_D04:3392503..3392723 +
Ghir_A05chromosomeGhir_A05:105666821..105667071 -
D04chromosomeD04:3412873..3413093 +
A05chromosomeA05:107242701..107242954 -
D04chromosomeD04:3257932..3258152 +
A05chromosomeA05:105770409..105770658 -
D04chromosomeD04:3092318..3092538 +
A05chromosomeA05:103723639..103723891 -
scaffold12118supercontigscaffold12118:2280..2500 -
Gbar_D04chromosomeGbar_D04:3182868..3183088 +
Gbar_A05chromosomeGbar_A05:99026274..99026516 -
D04chromosomeD04:3221861..3222081 +
A05chromosomeA05:103916511..103916754 -
CM017626.1chromosomeCM017626.1:3318918..3319138 +
CM017614.1chromosomeCM017614.1:101340761..101341020 -
CM017640.1chromosomeCM017640.1:109859545..109859790 -
CM017704.1chromosomeCM017704.1:3416444..3416664 +
CM017692.1chromosomeCM017692.1:101867621..101867856 -
Sequence
>NAU2121 ID=NAU2121|Name=NAU2121|organism=Gossypium hirsutum|type=genetic_marker|length=249bp
CCACTTCTCCCTCATTGTCTTTCTCTCCTACCTTCTTAGAATCTTCTTTG
GATTTCTAAATTTTAACAAAAACCCTAGGCAAAACGAAAAAAAACCAATA
ACGAAATTAAGTTTGAAATTCGTAGAGCCAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATTGTTTGTAATTGTT
AGAGATGATGGATCTAAGGAGATTAGCGTNGGTGGTTGTGACTGTTGCG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c05N/AAD_chr.05124.24NAU2121
2Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch05N/AAD_chr.0597.7NAU2121
3Hai-7124 x Junmian-1, F2 (2008) partHai-7124 x Junmian-1, F2 (2008) part.HJ-F2_chr05N/AAD_chr.0583.8NAU2121
4Zhongmiansuo-12 x 8891, RIL (2007)Zhongmiansuo-12 x 8891, RIL (2007).Z8-RIL_ch05/A05-2N/AAD_chr.0554.7NAU2121
5(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_A05-2N/AAD_chr.056.1NAU2121
6Hai-7124 x Junmian-1, BC1 (2008) partHai-7124 x Junmian-1, BC1 (2008) part.HJ-BC1_chr05N/AAD_chr.0596.6NAU2121
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr05N/AAD_chr.05315NAU2121
8TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c05N/AAD_chr.05177.67NAU2121
9(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr05-2N/AAD_chr.0519NAU2121
10DH962 x Jinmian-6, F2 (2009)DJ-F2_chr05N/AAD_chr.0528.5NAU2121
11DH962 x Jinmian-6, F2 (2009)DJ-F2_chr05/LG20N/AAD_chr.0528.5NAU2121
12Yumian-1 x 7235, RIL (2015)Y7-RIL_chr05N/AAD_chr.05112.5NAU2121
13DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr05-2N/AAD_chr.0543.97NAU2121
14TM-1 x 3-79, RIL (2014)T3-RIL.14_chr05N/AAD_chr.0521.4NAU2121
15TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr05-1N/AAD_chr.0598.2NAU2121
160-153 x sGK9708, RIL (2016)0s-RIL_chr05-2N/AAD_chr.05160NAU2121
17DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr05-1N/AAD_chr.05-117.8NAU2121
180-153 x sGK9708, RIL (2017)0s-RIL.17_chr05N/AAD_chr.0582.11NAU2121
19TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr05/A5N/AAD_chr.05179.74NAU2121-250
20TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr05N/AAD_chr.05192.1NAU2121-250
21TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.05N/AAD_chr.0521.38NAU2121