NAU2119, NAU2119 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU2119
Genbank ID	DR044201
Type	SSR
Species	Gossypium hirsutum
Germplasm	7235 7235
Source Sequence	DR044201.1
Source Type	EST
Repeat Motif	CTA(7)
PCR Condition	Annealing temperature: 57
Primer 1	NAU2119_F: GACAATGGCGGACAAAGTAT
Primer 2	NAU2119_R: GAGGATGATCCAGAAACAGC
Product Length	235
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DR044201

Publications


Year	Publication
2006	Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and applied genetics. 2006; 112(3):430-439

Germplasm


Stock Name	Type
7235	accession
7235	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DR044201.1	DR044201.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	AD-genome wide Reference Map (2009)	AD_ch25_Dt.06	N/A	89	NAU2119	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch25_Dt.06	N/A	74.44	NAU2119	View
3	TM-1 x (TX-0256 + TX-1046), CSIL (2016)	AD_ch25_Dt.06	N/A	26.4	NAU2119	View
4	0-153 x sGK9708, RIL (2015)	AD_ch25_Dt.06	N/A	48.32	NAU2119	View
5	0-153 x sGK9708, RIL (2016)	AD_ch25_Dt.06	N/A	132.8	NAU2119	View
6	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch25_Dt.06	N/A	54.5	NAU2119	View
7	TM-1 x Hai-7124, BC1 (2007)	AD_ch25_Dt.06	N/A	87	NAU2119-300	View
8	TM-1 x Hai-7124, BC1 (2008)	AD_ch25_Dt.06	N/A	54.53	NAU2119-300	View
9	TM-1 x Hai-7124, BC1 (2012)	AD_ch25_Dt.06	N/A	64.7	NAU2119-300	View

Sequence

>NAU2119 ID=NAU2119; Name=NAU2119; organism=Gossypium hirsutum; type=genetic_marker; length=235bp
GACAATGGCGGACAAAGTATNCCCTTCCTCCAAANCCACCGCACGCTGCC
CTGGCGGAGCAGCAGCTCCTACTACTACTACTACTACTACCTCCAACAAA
CAACGGGGAACTACCAAATCCCACCTCATAACCCCACCGCCGNCTACCCT
ANCGTCCACAGCCCCATAACAGACGTCGCAACTACCNGTCCACGGCGCAA
NTACTGTTNGCTGCTGCTGTTTCTGGATCATCCTC

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NAU2119, NAU2119 (genetic_marker) Gossypium hirsutum