NAU2096, NAU2096 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2096
Genbank IDDR044182
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044182.1
Source TypeEST
Repeat MotifTGG(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2096_F: GAGAGATAAACGGAGGTGGA
Primer 2NAU2096_R: TTAGTCAAACCGAGCAGCTT
Product Length212
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044182
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044182.1DR044182.1Gossypium hirsutumsequence_feature


Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
46_FISH_GEN-178-1117_fig3.jpgTwo BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A86.2NAU2096View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A139NAU2096View
3Emian-22 x 3-79, BC1 (2015)AD_ch12_At.12N/A139.1NAU2096View
4TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A31.9NAU2096-200View
5TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A68.51NAU2096-200View
6TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A67.9NAU2096-200View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A107.4NAU2096bView
Sequence
>NAU2096 ID=NAU2096; Name=NAU2096; organism=Gossypium hirsutum; type=genetic_marker; length=212bp
GAGAGATAAACGGAGGTGGATCTTTAGTGAAACAAGATACAAGTCCTGTG
AAGAGTGTAGGTAATAATGGTGGTGGTGGTGGTGGTGCAAGTACGGCAGC
AGCGGAGAAAAGTGCATGCTATTGCTTGTGGCGTGTGGCTAAANGCAGCG
AGAAGCTGAAGCTGCAGGTGGCGACTGCAGAAGCAGCTTTACAAGCTGCT
CGGTTTGACTAA