NAU2084, NAU2084 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2084
Genbank IDDR044172
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044172.1
Source TypeEST
Repeat MotifGAC(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2084_F: GCGAGGATGTTAAAGACGAT
Primer 2NAU2084_R: CCGGACAAGGTATTCTGTTC
Product Length150
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:3485981..3486744 +
A01chromosomeA01:3184750..3185524 +
CM018215.1chromosomeCM018215.1:2303408..2304176 +
CM018202.1chromosomeCM018202.1:2507679..2508439 +
D5_01chromosomeD5_01:2335012..2335775 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2476004..2476763 +
D10_01chromosomeD10_01:58263397..58264159 -
scaffold1463.1supercontigscaffold1463.1:71945..72719 -
scaffold3710_D01supercontigscaffold3710_D01:110214..110988 +
A01chromosomeA01:2245988..2246751 +
Ghir_D01chromosomeGhir_D01:2493821..2494595 +
Ghir_A01chromosomeGhir_A01:2781165..2781928 +
D01chromosomeD01:2371706..2372480 +
A01chromosomeA01:2674992..2675755 +
D01chromosomeD01:2488548..2489322 +
A01chromosomeA01:2800851..2801614 +
D01chromosomeD01:2291246..2291942 +
A01chromosomeA01:2752814..2753577 +
Gbar_D01chromosomeGbar_D01:2534877..2535645 +
Gbar_A01chromosomeGbar_A01:2497182..2497942 +
D01chromosomeD01:2432376..2433144 +
A01chromosomeA01:2497745..2498505 +
CM017623.1chromosomeCM017623.1:2546116..2546881 +
CM017610.1chromosomeCM017610.1:3016690..3017451 +
CM017649.1chromosomeCM017649.1:2357330..2358093 +
CM017636.1chromosomeCM017636.1:2542860..2543625 +
CM017701.1chromosomeCM017701.1:2681955..2682723 +
CM017688.1chromosomeCM017688.1:2524441..2525200 +
D01chromosomeD01:2492504..2493278 +
A01chromosomeA01:2798328..2799091 +
Chr01chromosomeChr01:2516807..2517566 +
Chr01chromosomeChr01:2409035..2409794 +
Chr01chromosomeChr01:2310860..2311623 +
B_01chromosomeB_01:2590962..2591720 +
Chr02chromosomeChr02:2448307..2449059 +
Chr_02chromosomeChr_02:2440033..2440796 +
Chr02chromosomeChr02:2665456..2666218 +
Chr02chromosomeChr02:1852194..1853066 +
Chr02chromosomeChr02:2237299..2238166 +
E01chromosomeE01:3300681..3301443 +
Chr01chromosomeChr01:196903277..196904033 -
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044172.1DR044172.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A13.2NAU2084View
2Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A12.2NAU2084View
3W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A93.8NAU2084View
40-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A29.7NAU2084View
5Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A11.7NAU2084/1000yView
Sequence
>NAU2084 ID=NAU2084; Name=NAU2084; organism=Gossypium hirsutum; type=genetic_marker; length=150bp
GCGAGGATGTTAAAGACGATGATGACGACGATGAAGGCGAAGGCGACGGC
GACGGCGATGACGATGACGACGACGACGACNGATGATGACAGTGATGACG
ATGAAGAAGGTGAAGAAGAGGAGGATATGGGAACAGAATACCTTGTCCGG