NAU2083, NAU2083 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2083
Genbank IDDR044172
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044172.1
Source TypeEST
Repeat MotifGAC(9)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2083_F: AGAAGAGGTTGACGGTGAAG
Primer 2NAU2083_R: TGAGTGAAGAACCTGCACAT
Product Length168
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:3485784..3485943 +
A01chromosomeA01:3184553..3184712 +
CM018215.1chromosomeCM018215.1:2303211..2303370 +
CM018202.1chromosomeCM018202.1:2507479..2507641 +
D5_01chromosomeD5_01:2334809..2334974 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2475804..2475966 +
D10_01chromosomeD10_01:58264197..58264362 -
CM016614.1chromosomeCM016614.1:3431774..3431936 +
scaffold1463.1supercontigscaffold1463.1:72757..72916 -
scaffold3710_D01supercontigscaffold3710_D01:110017..110176 +
A01chromosomeA01:2245791..2245950 +
scaffold204763supercontigscaffold204763:33..192 -
Ghir_D01chromosomeGhir_D01:2493624..2493783 +
Ghir_A01chromosomeGhir_A01:2780968..2781127 +
D01chromosomeD01:2371509..2371668 +
A01chromosomeA01:2674795..2674954 +
D01chromosomeD01:2488351..2488510 +
A01chromosomeA01:2800654..2800813 +
D01chromosomeD01:2291049..2291208 +
A01chromosomeA01:2752617..2752776 +
scaffold7906supercontigscaffold7906:604237..604396 +
scaffold12265supercontigscaffold12265:278190..278352 -
Gbar_D01chromosomeGbar_D01:2534680..2534839 +
Gbar_A01chromosomeGbar_A01:2496982..2497144 +
D01chromosomeD01:2432179..2432338 +
A01chromosomeA01:2497545..2497707 +
CM017623.1chromosomeCM017623.1:2545919..2546078 +
CM017610.1chromosomeCM017610.1:3016493..3016652 +
CM017649.1chromosomeCM017649.1:2357133..2357292 +
CM017636.1chromosomeCM017636.1:2542654..2542822 +
CM017701.1chromosomeCM017701.1:2681758..2681917 +
CM017688.1chromosomeCM017688.1:2524253..2524403 +
D01chromosomeD01:2492307..2492466 +
A01chromosomeA01:2798131..2798290 +
Chr01chromosomeChr01:2516607..2516769 +
Chr01chromosomeChr01:2408835..2408997 +
Chr01chromosomeChr01:2310657..2310822 +
B_01chromosomeB_01:2590756..2590924 +
Chr02chromosomeChr02:2448104..2448269 +
chr02chromosomechr02:2276307..2276596 +
Chr_02chromosomeChr_02:2439830..2439995 +
Chr02chromosomeChr02:2665253..2665418 +
Chr02chromosomeChr02:1851877..1852156 +
Chr02chromosomeChr02:2237021..2237261 +
E01chromosomeE01:3300481..3300643 +
F01chromosomeF01:2349916..2350087 +
Chr01chromosomeChr01:196904071..196904233 -
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044172.1DR044172.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch01_At.01N/A113.98NAU2083View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch01_At.01N/A97.91NAU2083View
3AD-genome wide Reference Map (2009)AD_ch01_At.01N/A181NAU2083View
4TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A0NAU2083View
5Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A15NAU2083View
6Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A10.9NAU2083View
7Prema x 86-1, RIL (2015)AD_ch01_At.01N/A0NAU2083View
8TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A144.4NAU2083View
9W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A96.3NAU2083View
10(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.01N/A111.5NAU2083View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A136NAU2083View
12CCRI-36 x G2005, RIL (2016)AD_ch15_Dt.01N/A2.6NAU2083View
13TM-1 x Hai-7124, BC1 (2007)AD_ch01_At.01N/A26.4NAU2083-300View
14TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A29.74NAU2083-300View
15TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A104.8NAU2083-300View
16Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A9.9NAU2083/150y(C1)View
17TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A144.38NAU2083View
Sequence
>NAU2083 ID=NAU2083; Name=NAU2083; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
AGAAGAGGTTGACGGTGAAGATGAAAGTGAAGTAGAAGGTGGCGAACCGG
AAGAGGAAGACGACGATGACGACGACGAGGATGAGGATGATGAAGGCGAA
GATGACGACGACGACGACGACGACGACGACAAGGAGAGGAGGATGACGAT
GTGCAGGTTCTTCACTCA