NAU2015, NAU2015 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU2015
Genbank ID	DR044136
Type	SSR
Species	Gossypium hirsutum
Germplasm	7235 7235
Source Sequence	DR044136.1
Source Type	EST
Repeat Motif	GCG(5)
PCR Condition	Annealing temperature: 57
Primer 1	NAU2015_F: TATTAAGAGTCGCCCTTTGG
Primer 2	NAU2015_R: GTTTCCATTTCAGCTCCATC
Product Length	236
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DR044136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At01	chromosome	At01:82837671..82838106 -
scaffold17779	supercontig	scaffold17779:30749..31184 -

Publications


Year	Publication
2006	Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and applied genetics. 2006; 112(3):430-439

Germplasm


Stock Name	Type
7235	accession
7235	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DR044136.1	DR044136.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	JLZM x ZJXSLS, F2 (2008)	A_JZ_A01	N/A	145.1	NAU2015	View
2	AD-genome wide Reference Map (2009)	AD_ch15_Dt.01	N/A	11	NAU2015	View
3	TM-1 x Hai-7124, BC1 (2007)	AD_ch15_Dt.01	N/A	118.4	NAU2015-950	View
4	TM-1 x Hai-7124, BC1 (2008)	AD_ch15_Dt.01	N/A	116.62	NAU2015-950	View
5	TM-1 x Hai-7124, BC1 (2012)	AD_ch15_Dt.01	N/A	8.3	NAU2015-950	View

Sequence

>NAU2015 ID=NAU2015; Name=NAU2015; organism=Gossypium hirsutum; type=genetic_marker; length=236bp
TATTAAGAGTCGCCCTTTGGTGTTCTAATTCAATCAGTGAGGTGAAGAAA
AATGTCTTGCTGTGGTGGAAACTGCGGTTGCGGCTCCGGTTGCAAGTGCG
GCGGCGGCGGCGGCTGCGGCTGCGGCGGTTGCAAGATGTACCCTGAGATG
AACTTTGCTGAGCAAACCACAACTGANACACTTGTTCTTGGCGTGGCACC
CCGGAAAGTGAACTTTGATGGAGCTGAAATGGAAAC

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NAU2015, NAU2015 (genetic_marker) Gossypium hirsutum