NAU1300, NAU1300 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1300
Genbank IDBF279128
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TGA)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU1300_F: CAGGAGAATTAAAGGCAAGG
Primer 2NAU1300_R: TTACGGTGCAAATCATCAAC
Product Length220
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF279128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:43188434..43188650 -
A04chromosomeA04:66436675..66436903 -
CM018218.1chromosomeCM018218.1:41457870..41458089 -
CM018205.1chromosomeCM018205.1:65018082..65018313 -
D5_04chromosomeD5_04:12372462..12372678 +
KI_2_4chromosomeKI_2_4:6630092..6630317 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:17212591..17212810 +
D10_04chromosomeD10_04:40403405..40403621 -
CM016617.1chromosomeCM016617.1:105477419..105477635 -
Dt_chr12chromosomeDt_chr12:16277780..16277996 -
scaffold3977_D04supercontigscaffold3977_D04:15062..15278 -
A04chromosomeA04:47724764..47724992 -
Ghir_D04chromosomeGhir_D04:43209496..43209712 -
Ghir_A04chromosomeGhir_A04:68497363..68497591 -
D04chromosomeD04:44259947..44260163 -
A04chromosomeA04:71595879..71596107 -
D04chromosomeD04:43393822..43394038 -
A04chromosomeA04:68580830..68581058 -
D04chromosomeD04:41035846..41036062 -
A04chromosomeA04:64196801..64197029 -
At04chromosomeAt04:47717767..47717998 -
At04chromosomeAt04:47709056..47709287 -
scaffold8070supercontigscaffold8070:231397..231616 +
scaffold610supercontigscaffold610:55048..55279 -
scaffold610supercontigscaffold610:46337..46568 -
Gbar_D04chromosomeGbar_D04:39559963..39560182 -
Gbar_A04chromosomeGbar_A04:65420127..65420358 -
D04chromosomeD04:44710099..44710318 -
A04chromosomeA04:66014141..66014372 -
CM017626.1chromosomeCM017626.1:41808720..41808939 -
CM017613.1chromosomeCM017613.1:67280553..67280781 -
CM017652.1chromosomeCM017652.1:44472234..44472450 -
CM017639.1chromosomeCM017639.1:75134195..75134426 -
CM017704.1chromosomeCM017704.1:41771820..41772039 -
CM017691.1chromosomeCM017691.1:65613535..65613760 -
D04chromosomeD04:44874114..44874330 -
A04chromosomeA04:72179621..72179849 -
Chr04chromosomeChr04:91950967..91951198 -
Chr04chromosomeChr04:93565539..93565758 -
Chr04chromosomeChr04:12328763..12328979 +
B_02chromosomeB_02:16342120..16342339 +
Chr12chromosomeChr12:41417109..41417325 -
chr12chromosomechr12:19515958..19516174 -
Chr_12chromosomeChr_12:15522802..15523018 -
Chr12chromosomeChr12:18189760..18189982 -
Chr12chromosomeChr12:14101755..14101971 -
Chr12chromosomeChr12:17289220..17289436 -
E04chromosomeE04:58387711..58387945 +
F04chromosomeF04:76282678..76282899 -
Chr12chromosomeNAU1300:1..544 .
Chr12:23120172..23120712 -
Chr12chromosomeNAU1300:1..544 .
Chr12:12347930..12348470 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A10N/A63.6NAU1300View
Sequence
>NAU1300 ID=NAU1300; Name=NAU1300; organism=Gossypium arboreum; type=genetic_marker; length=220bp
CAGGAGAATTAAAGGCAAGGGTTGATGATGATGATGATGATGGGTTCAAG
ACCCCGACGTCTATGGACCATAAAATCCCAGAGAAGAAACAATGCCCACC
TGCACCAAGAAAGCCAAAGGCGAATAAAAGAAAAGCATCGCCCAGTGCAA
GCATATGCANGGTTTCAGAAGAGGTTGAGTCCTGTTTTGCTGCCTCACTT
GTTGATGATTTGCACCGTAA