NAU1232, NAU1232 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1232
Genbank IDBG439886
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TGTA)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU1232_F: GTGGAATGTGGTGATGAGAA
Primer 2NAU1232_R: CAATCCCACCCCATATCTA
Product Length185
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG439886
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:69820941..69821112 +
A11chromosomeA11:110923810..110923997 +
CM018225.1chromosomeCM018225.1:66048858..66049029 +
CM018212.1chromosomeCM018212.1:111565055..111565238 +
D5_11chromosomeD5_11:2986809..2986980 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:4269708..4269891 -
D10_11chromosomeD10_11:65623745..65623916 +
D11chromosomeD11:62737636..62737807 +
A11chromosomeA11:89890195..89890382 +
Scaffold404supercontigScaffold404:60105..60276 +
Ghir_A11chromosomeGhir_A11:119801072..119801259 +
D11chromosomeD11:68000204..68000375 +
A11chromosomeA11:118110166..118110353 +
D11chromosomeD11:69052093..69052264 +
A11chromosomeA11:116014119..116014306 +
D11chromosomeD11:65604750..65604921 +
A11chromosomeA11:112668695..112668882 +
scaffold4137supercontigscaffold4137:198207..198378 -
scaffold1225supercontigscaffold1225:127713..127896 -
Gbar_D11chromosomeGbar_D11:65826328..65826499 +
Gbar_A11chromosomeGbar_A11:109890188..109890371 +
D11chromosomeD11:68735769..68735940 +
A11chromosomeA11:113065578..113065761 +
CM017633.1chromosomeCM017633.1:67738574..67738745 +
CM017620.1chromosomeCM017620.1:116969687..116969870 +
CM017659.1chromosomeCM017659.1:70239857..70240028 +
CM017646.1chromosomeCM017646.1:123042938..123043121 +
CM017711.1chromosomeCM017711.1:65684620..65684791 +
CM017698.1chromosomeCM017698.1:111721179..111721358 +
D11chromosomeD11:69312651..69312822 +
A11chromosomeA11:120743357..120743544 +
Chr11chromosomeChr11:128299312..128299495 +
Chr11chromosomeChr11:127039225..127039408 +
Chr11chromosomeChr11:2828790..2828961 -
B_11chromosomeB_11:98311038..98311221 +
Chr07chromosomeChr07:66593280..66593451 +
chr07chromosomechr07:47528093..47528264 +
Chr_07chromosomeChr_07:46420546..46420717 +
Chr07chromosomeChr07:68164831..68165002 +
Chr07chromosomeChr07:42716548..42716719 +
Chr07chromosomeChr07:35491876..35492059 +
Chr07chromosomeChr07:44746549..44746728 +
F11chromosomeF11:96440728..96440890 +
Chr11chromosomeChr11:1214798..1214965 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A162.8NAU1232aView
2CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A167.1NAU1232cView
3AD-genome wide Reference Map (2009)AD_ch11_At.11N/A155nau1232View
4IL138-A11-3 x TM-1, F2:3 (2014)AD_ch11_At.11N/A14.7nau1232View
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch11_At.11N/A18.6nau1232View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A0nau1232View
7TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A16.8NAU1232-230View
8TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A16.85NAU1232-230View
9TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A144.7NAU1232-230View
Sequence
>NAU1232 ID=NAU1232; Name=NAU1232; organism=Gossypium arboreum; type=genetic_marker; length=185bp
GTGGAATGTGGTGATGAGAATGGGGTTTGTATGAAGAGTAGTGCTAAAGT
GTATCAAGATGAGGATTTGAAGGATTGGCCATGGCCTTTTCAACTTTAAA
ATTTATGTATAATAGAACAAATGTGTGTATGTATGTATGTATGTACGTAT
CTATATGGCTTATATATAGATATGGGGTGGGATTG