NAU1225, NAU1225 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1225
Genbank IDBG440640
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GCTCAT)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1225_F: CAGCAAATTCGCAAGAGTTA
Primer 2NAU1225_R: CTAACAGGGGTGACATAGGG
Product Length241
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG440640
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:14589189..14589428 +
A05chromosomeA05:15561190..15561435 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15288704..15288943 +
CM016626.1chromosomeCM016626.1:22517217..22517456 +
Dt_chr11chromosomeDt_chr11:3259224..3259469 +
Dt_chr9chromosomeDt_chr9:55189774..55190013 -
D05chromosomeD05:13668937..13669176 +
A05chromosomeA05:13830778..13831023 +
Ghir_D05chromosomeGhir_D05:14213570..14213809 +
Ghir_A05chromosomeGhir_A05:15535875..15536120 +
D05chromosomeD05:13836639..13836878 +
A05chromosomeA05:15032533..15032778 +
D05chromosomeD05:14036374..14036613 +
A05chromosomeA05:15551113..15551358 +
D05chromosomeD05:13927777..13928016 +
A05chromosomeA05:15712778..15713023 +
At05chromosomeAt05:11497842..11498069 +
scaffold256supercontigscaffold256:196462..196689 +
scaffold3191supercontigscaffold3191:12058..12285 -
Gbar_D05chromosomeGbar_D05:14077311..14077538 +
Gbar_A05chromosomeGbar_A05:14818664..14818891 +
CM017614.1chromosomeCM017614.1:15251770..15252009 +
CM017653.1chromosomeCM017653.1:14390051..14390290 +
CM017640.1chromosomeCM017640.1:15480018..15480257 +
CM017705.1chromosomeCM017705.1:14092983..14093222 +
D05chromosomeD05:14406032..14406271 +
A05chromosomeA05:15810022..15810267 +
Chr05chromosomeChr05:16360476..16360715 +
Chr05chromosomeChr05:15130724..15130963 +
B_05chromosomeB_05:71061469..71061708 -
Chr09chromosomeChr09:13884985..13885236 +
Chr13chromosomeChr13:179255363..179255608 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A0.6NAU1225View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch19_Dt.05N/A0.2NAU1225View
3Yumian-1 x T586, RIL (2006)AD_ch05_At.05N/A0NAU1225View
460182 x Jun Mian 1, F2:3 (2007)AD_ch23_Dt.09N/A0NAU1225View
5Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A49.4NAU1225View
6PD6992 x SM3, F2:3 (2005)AD_ch19_Dt.05N/A0.8NAU1225View
7Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A11.3NAU1225View
80-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A17.4NAU1225View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A90.8NAU1225View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A124.9NAU1225View
11CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A57.6NAU1225View
12JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A8.5NAU1225-bView
13JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A59.8NAU1225-aView
14Yumian-1 x T586, RIL (2009)AD_ch05_At.05N/A0NAU1225/250yView
15CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A99.4NAU1225View
Sequence
>NAU1225 ID=NAU1225; Name=NAU1225; organism=Gossypium arboreum; type=genetic_marker; length=241bp
CAGCAAATTCGCAAGAGTTAACACCATTGATATAGAGACAACTTCCAGAG
AGCAAAAGCACGAGACCTTCGTTCCCCAGACCACCCAAAAGCCACATGAA
CAAGAGCCAAGGTTCATGCCTGAAACCCAAAATGGTTATGGCCTTGTCGG
CCACGAGTCAGGCTCATGCTCATGCTCATGCTCATGCCGGCCCAGCTTCA
CGCACCGAAGAGACCTATGAACCCTATGTCACCCCTGTTAG