NAU1221, NAU1221 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1221
Genbank IDBG440896
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCAAGC)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU1221_F: CATGCAAATCCATGCTAGAG
Primer 2NAU1221_R: AGGTTTCTTTGGTGGTGAAA
Product Length242
Restriction EnzymeEcoRI; XhoI
PolymorphismP_ NAU1221
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG440896
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch19_Dt.05N/A128NAU1221View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A157NAU1221View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch19_Dt.05N/A0NAU1221View
4Yumian-1 x T586, RIL (2006)AD_ch05_At.05N/A5.5NAU1221View
5PD6992 x SM3, F2:3 (2005)AD_ch19_Dt.05N/A0.9NAU1221View
6Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A56.1NAU1221View
7Baimian 1 x TM-1 , F2:3 (2014)AD_ch19_Dt.05N/A34.2NAU1221View
8Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A15NAU1221View
9TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch19_Dt.05N/A17.9NAU1221View
100-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A15.2NAU1221View
11(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.05N/A102.5NAU1221View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A85.9NAU1221View
13CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A54.3NAU1221View
14TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A52.04NAU1221aView
15(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A70.2NAU1221aView
16TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A148.7NAU1221aView
17GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A45.7NAU1221aView
18901-001 x sGK156, F2 (2019)AD_ch19_Dt.05N/A12.73NAU1221aView
19TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A58.27NAU1221cView
20TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A138.2NAU1221cView
21TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A62.86NAU1221bView
22(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch21_Dt.11N/A127.3NAU1221bView
23TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A121NAU1221bView
24GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A43.1NAU1221bView
25901-001 x sGK156, F2 (2019)AD_ch19_Dt.05N/A20.5NAU1221bView
26TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A69.9NAU1221-310View
27TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A69.64NAU1221-310View
28TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A121.8NAU1221-310View
29Yumian-1 x T586, RIL (2009)AD_ch05_At.05N/A5.5NAU1221/220y(C19)View
30TM-1 x 3-79, RIL (2011)AD_ch19_Dt.05N/A26.9NAU1221_232/238View
31CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A98.83NAU1221View
32TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A138.23NAU1221cView
33TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A148.68NAU1221aView
34TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A120.96NAU1221bView
35PD 94042 x (AD)4-08, F2 (2016)AD_ch05_At.05N/A101.9NAU1221View
36TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A153.7NAU1221-215View
Sequence
>NAU1221 ID=NAU1221; Name=NAU1221; organism=Gossypium arboreum; type=genetic_marker; length=242bp
CATGCAAATCCATGCTAGAGAGTACTTCAGCAAATTCCCAAGAGTTAACA
CCAATGAGAAAGAGACAACAACCAGAGAGNCAAAGCACGAGACCTTCGTT
CCCCAGACCCACCCAAAGCCAGAAGAAACAGAGCCAAGGTTCATTCCTTG
AAACCCAAATGGTTATGGCCTTTACGGCCAAGAGTCAAGCTCAAGCTCAA
GCTCAAGCTCAAGCCGGGCCAATTTCACCACCAAAGAAACCT