NAU1201, NAU1201 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1201
Genbank IDBG442619
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCCATC)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1201_F: CCGATATCTTACTTTCCAACCT
Primer 2NAU1201_R: AAGGGGTTTGAAGGGTTATC
Product Length165
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG442619
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:39367592..39367762 +
A13chromosomeA13:72562305..72562475 +
CM018227.1chromosomeCM018227.1:35689594..35689752 +
CM018214.1chromosomeCM018214.1:77806824..77806982 +
D5_13chromosomeD5_13:34974113..34974271 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:89104547..89104711 +
D10_13chromosomeD10_13:36951540..36951704 +
CM016626.1chromosomeCM016626.1:113141457..113141621 +
Dt_chr9chromosomeDt_chr9:18844940..18845110 +
Dt_chr13chromosomeDt_chr13:26615475..26615645 +
At_chr12chromosomeAt_chr12:78981219..78981389 +
D13chromosomeD13:35330866..35331036 +
A13chromosomeA13:49726182..49726352 +
Ghir_D13chromosomeGhir_D13:38765029..38765199 +
Ghir_A13chromosomeGhir_A13:76854211..76854381 +
D13chromosomeD13:40120469..40120639 +
A13chromosomeA13:79900586..79900756 +
D13chromosomeD13:38902986..38903156 +
A13chromosomeA13:77795892..77796062 +
D13chromosomeD13:35831851..35832021 +
A13chromosomeA13:76478865..76479035 +
At13chromosomeAt13:53478234..53478392 +
At13chromosomeAt13:53473854..53474012 +
scaffold1834supercontigscaffold1834:16487..16645 +
scaffold1834supercontigscaffold1834:12107..12265 +
scaffold26288supercontigscaffold26288:250..408 -
Gbar_D13chromosomeGbar_D13:35440164..35440322 +
Gbar_A13chromosomeGbar_A13:78928010..78928168 +
D13chromosomeD13:36992635..36992793 +
A13chromosomeA13:82141630..82141788 +
CM017622.1chromosomeCM017622.1:79546102..79546278 +
CM017661.1chromosomeCM017661.1:39484020..39484178 +
CM017648.1chromosomeCM017648.1:83167382..83167552 +
CM017713.1chromosomeCM017713.1:36769821..36769979 +
CM017700.1chromosomeCM017700.1:80102093..80102257 +
D13chromosomeD13:39864588..39864758 +
A13chromosomeA13:80012050..80012220 +
Chr13chromosomeChr13:87465415..87465579 +
Chr13chromosomeChr13:35210812..35210970 +
Chr13chromosomeChr13:35898345..35898515 +
Chr_13chromosomeChr_13:24575898..24576061 +
Chr13chromosomeChr13:38416209..38416373 +
Chr13chromosomeChr13:24754010..24754623 +
E13chromosomeE13:77853609..77853773 +
F13chromosomeF13:65756964..65757122 +
Chr13chromosomeChr13:58315527..58315685 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A83.8NAU1201View
2AD-genome wide Reference Map (2009)AD_ch13_At.13N/A123NAU1201View
3Yumian-1 x T586, F2:7 (2008)AD_ch13_At.13N/A0NAU1201View
4Yumian-1 x T586, RIL (2006)AD_ch13_At.13N/A15.6NAU1201View
5H18 x TM-1, F2 (2005)AD_ch13_At.13N/A98.1NAU1201View
6Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A63.3NAU1201View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch13_At.13N/A60.4NAU1201View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A86.3NAU1201View
9TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A58.6NAU1201-155View
10TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A58.95NAU1201-155View
11TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A78.1NAU1201-155View
12Yumian-1 x T586, RIL (2009)AD_ch13_At.13N/A3.7NAU1201/180t(C13)View
Sequence
>NAU1201 ID=NAU1201; Name=NAU1201; organism=Gossypium arboreum; type=genetic_marker; length=165bp
CCGATATCTTACTTTCCAACCTCTTTCTTCCATCTCCATCTCCATCTCCT
TTCTGCAATTATTCCCAACTTTCCATGGCTTCCTTCACACCCAATCTAGA
ACCTGCCCCTGACACCTCTCTTCAGTTCAAGCCCAAGAAACCCAGGATAA
CCCTTCAAACCCCTT