NAU1200, NAU1200 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1200
Genbank IDBG442686
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CAG)11
PCR ConditionAnnealing temperature: 57
Primer 1NAU1200_F: CAACAGCAACAACCACAA
Primer 2NAU1200_R: CTGCCTCGAGGACAAATAGT
Product Length213
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG442686
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:54620940..54621176 +
D05chromosomeD05:47891784..47891990 -
CM018206.1chromosomeCM018206.1:62575526..62575732 +
CM018219.1chromosomeCM018219.1:47306554..47306760 -
D5_05chromosomeD5_05:43419259..43419459 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:76832130..76832342 +
D10_05chromosomeD10_05:15339037..15339237 +
CM016618.1chromosomeCM016618.1:26262396..26262602 +
At_chr3chromosomeAt_chr3:1227849..1228073 +
Dt_chr9chromosomeDt_chr9:22332155..22332361 -
A05chromosomeA05:49494584..49494820 +
D05chromosomeD05:46703596..46703802 -
Ghir_D05chromosomeGhir_D05:47663124..47663330 -
Ghir_A05chromosomeGhir_A05:67092260..67092496 -
A05chromosomeA05:68697865..68698101 +
D05chromosomeD05:48748364..48748570 -
A05chromosomeA05:67478079..67478303 +
D05chromosomeD05:49424826..49425032 -
A05chromosomeA05:66447782..66448018 +
D05chromosomeD05:48178695..48178901 -
At05chromosomeAt05:48940467..48940673 +
Dt05chromosomeDt05:49846120..49846326 -
scaffold5512supercontigscaffold5512:215591..215797 +
scaffold9167supercontigscaffold9167:208326..208532 -
Gbar_D05chromosomeGbar_D05:44952638..44952844 +
Gbar_A05chromosomeGbar_A05:63090840..63091046 +
A05chromosomeA05:65595930..65596136 +
D05chromosomeD05:49614898..49615104 -
CM017614.1chromosomeCM017614.1:64553923..64554129 +
CM017627.1chromosomeCM017627.1:48554786..48554992 -
CM017640.1chromosomeCM017640.1:68435863..68436060 +
CM017653.1chromosomeCM017653.1:49682936..49683148 -
CM017692.1chromosomeCM017692.1:64651296..64651502 +
CM017705.1chromosomeCM017705.1:48844605..48844811 -
A05chromosomeA05:69139515..69139751 +
D05chromosomeD05:50191901..50192107 -
Chr05chromosomeChr05:69333673..69333879 +
Chr05chromosomeChr05:44186349..44186549 -
B_05chromosomeB_05:27326285..27326491 +
Chr09chromosomeChr09:44412293..44412493 -
chr09chromosomechr09:36159810..36160019 -
Chr_09chromosomeChr_09:35064144..35064344 -
Chr09chromosomeChr09:47462635..47462835 -
Chr09chromosomeChr09:32578151..32578357 -
Chr09chromosomeChr09:28452711..28452908 -
Chr09chromosomeChr09:33573018..33573215 -
E05chromosomeE05:79130163..79130357 -
F05chromosomeF05:56315093..56315308 +
Chr05chromosomeChr05:33972327..33972527 +
Chr09chromosomeNAU1200:1..653 .
Chr09:43771056..43771696 -
scaffold222supercontigNAU1200:1..653 .
scaffold222:160317..160957 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch05_At.05N/A16.6NAU1200View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A36NAU1200View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A95.3NAU1200View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A73.1NAU1200View
57235 x TM-1, F2:3 (2005)AD_ch05_At.05N/A0NAU1200View
6Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A93.6NAU1200View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A46.6NAU1200View
80-153 x sGK9708, RIL (2016)AD_ch05_At.05N/A98.1NAU1200View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A181.3NAU1200View
10901-001 x sGK156, F2 (2019)AD_ch05_At.05N/A4.82NAU1200View
Sequence
>NAU1200 ID=NAU1200; Name=NAU1200; organism=Gossypium arboreum; type=genetic_marker; length=213bp
CAACAGCAACAACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTTCTTGCATGCTGCTGGTGCACCGCATTACATTCATCATCACCAGTCTG
GGGCAGTGCCAATCTCAGCTTATTATCCTGTATATCCTTCCCAACAGCAA
CATCACCATCATCAAACACAGATTGATCAGCAATATCCCCTGTACTATTT
GTCCTCGAGGCAG