NAU1190, NAU1190 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1190
Genbank IDBG443893
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GGC)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU1190_F: CCATGTCCGTATCCATGTTA
Primer 2NAU1190_R: TAAGGCAAGATAGGGTCAGG
Product Length239
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG443893
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:53190181..53190398 -
A03chromosomeA03:82264515..82264729 -
CM018216.1chromosomeCM018216.1:49890940..49891157 -
CM018204.1chromosomeCM018204.1:83555495..83555727 -
D5_03chromosomeD5_03:17412676..17412893 +
KI_03chromosomeKI_03:33828353..33828573 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:107864452..107864690 -
D10_03chromosomeD10_03:17232447..17232664 +
CM016616.1chromosomeCM016616.1:28827339..28827556 -
Dt_chr5chromosomeDt_chr5:34478135..34478352 +
At_chr5chromosomeAt_chr5:26306992..26307206 -
D02chromosomeD02:50485507..50485724 -
A03chromosomeA03:75568551..75568765 -
Ghir_D02chromosomeGhir_D02:52287611..52287828 -
Ghir_A03chromosomeGhir_A03:89358101..89358315 -
D02chromosomeD02:52918554..52918771 -
A03chromosomeA03:88602416..88602630 -
D02chromosomeD02:53665296..53665513 -
A03chromosomeA03:86384991..86385205 -
D02chromosomeD02:50709622..50709839 -
A03chromosomeA03:81951326..81951540 -
At03chromosomeAt03:77602573..77602805 -
scaffold10038supercontigscaffold10038:931323..931540 +
scaffold10038supercontigscaffold10038:929304..929521 +
scaffold1128supercontigscaffold1128:417423..417655 -
Gbar_D02chromosomeGbar_D02:50469564..50469781 -
Gbar_A03chromosomeGbar_A03:82910951..82911183 -
D02chromosomeD02:51816271..51816488 -
A03chromosomeA03:85032082..85032317 -
CM017624.1chromosomeCM017624.1:52700954..52701171 -
CM017612.1chromosomeCM017612.1:84532453..84532694 -
CM017638.1chromosomeCM017638.1:90859732..90859973 -
CM017702.1chromosomeCM017702.1:51299115..51299332 -
CM017690.1chromosomeCM017690.1:84966533..84966768 -
D02chromosomeD02:54661385..54661602 -
A03chromosomeA03:89890628..89890842 -
Chr03chromosomeChr03:27981834..27982075 +
Chr03chromosomeChr03:27194766..27195003 +
Chr03chromosomeChr03:45811512..45811729 -
B_03chromosomeB_03:23614288..23614496 +
Chr05chromosomeChr05:48708608..48708828 -
chr05chromosomechr05:35755049..35755266 -
Chr_05chromosomeChr_05:31477905..31478122 -
Chr05chromosomeChr05:50153211..50153428 -
Chr05chromosomeChr05:27082967..27083184 -
Chr05chromosomeChr05:33514657..33514874 -
E03chromosomeE03:98068336..98068553 -
F03chromosomeF03:87370449..87370675 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch03_At.03N/A19.1NAU1190View
2AD-genome wide Reference Map (2009)AD_ch03_At.03N/A101NAU1190View
3TM-1 x 3-79, RIL (2006)AD_ch03_At.03N/A66.8NAU1190View
4TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A58.2NAU1190View
5Yumian-1 x T586, F2:7 (2008)AD_ch03_At.03N/A27.6NAU1190View
6Yumian-1 x T586, RIL (2006)AD_ch03_At.03N/A41.9NAU1190View
77235 x TM-1, F2:3 (2005)AD_ch03_At.03N/A32.6NAU1190View
8Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A62NAU1190View
9TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A58.2NAU1190View
100-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A25.5NAU1190View
11(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.02N/A83.8NAU1190View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A75.2NAU1190View
13CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A93.3NAU1190View
14CCRI-36 x G2005, RIL (2016)AD_ch03_At.03N/A66.64NAU1190View
15TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A62.9NAU1190-400View
16TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A60.37NAU1190-400View
17TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A58.6NAU1190-400View
18Yumian-1 x T586, RIL (2009)AD_ch03_At.03N/A43.1NAU1190/200y(C3)View
19DH962 x Jinmian-6, F2 (2009)AD_ch03_At.03N/A46.3NAU1190aView
20DH962 x Jinmian-6, F2 (2009)AD_ch03_At.03N/A46.3NAU1190aView
21HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A0NAU1190aView
22DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A84.01NAU1190aView
23TM-1 x Hai-7124, BC1S1 (2007)AD_ch05_At.05N/A80.7NAU1190_205View
24HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A0NAU1190bView
25HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A2.1NAU1190cView
26TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A58.17NAU1190View
Sequence
>NAU1190 ID=NAU1190; Name=NAU1190; organism=Gossypium arboreum; type=genetic_marker; length=239bp
CCATGTCCGTATCCATGTTACCCACCACCAACAGGCAGCGGCGGCGGAGG
CGAAGGTGGAGGCGGCGGCGGCGGCGGCACAGTGACACAAACACCTCCAG
CTAGTTACTCACCACCCTCCCAAACAGGATCAGTATACCCTCCACCTACA
GGGAACTTACCATATTACTATCCACCACCACCTTATGGTGGAGGTAATTC
TTTATATGGTCAGCCCCCTCCTGACCCTATCTTGCCTTA