NAU1159, NAU1159 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1159
Genbank IDBG446213
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(ATACAT)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1159_F: ATTTTGGCAGACCTTCATTC
Primer 2NAU1159_R: CTATGACCCGTTTTGGTTTT
Product Length223
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG446213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018216.1chromosomeCM018216.1:1424122..1424353 +
CM018203.1chromosomeCM018203.1:1052388..1052609 -
KI_03chromosomeKI_03:1166938..1167169 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1384725..1384945 +
D10_03chromosomeD10_03:62548785..62549017 +
scaffold2234.1supercontigscaffold2234.1:16788..17009 -
scaffold171.1supercontigscaffold171.1:686161..686382 -
scaffold192_A02supercontigscaffold192_A02:12559..12792 +
D02chromosomeD02:1643259..1643488 +
Ghir_D02chromosomeGhir_D02:1614747..1614973 +
D02chromosomeD02:1491111..1491340 +
A02chromosomeA02:1382041..1382274 +
D02chromosomeD02:1616683..1616912 +
A02chromosomeA02:1368336..1368557 +
D02chromosomeD02:1485122..1485352 +
A02chromosomeA02:1378542..1378775 +
scaffold7664supercontigscaffold7664:48939..49160 -
scaffold7664supercontigscaffold7664:45635..45856 -
scaffold17248supercontigscaffold17248:42788..43019 -
Gbar_D02chromosomeGbar_D02:1593627..1593858 +
Gbar_A02chromosomeGbar_A02:1277651..1277872 +
D02chromosomeD02:1429560..1429791 +
A02chromosomeA02:1288494..1288715 +
CM017624.1chromosomeCM017624.1:1552629..1552858 +
CM017611.1chromosomeCM017611.1:1289415..1289642 +
CM017650.1chromosomeCM017650.1:1774388..1774619 +
CM017637.1chromosomeCM017637.1:1449630..1449875 +
CM017702.1chromosomeCM017702.1:1250320..1250550 +
CM017689.1chromosomeCM017689.1:1274251..1274472 +
D02chromosomeD02:1620354..1620583 +
A02chromosomeA02:1444697..1444930 +
Chr03chromosomeChr03:131110508..131110741 -
Chr03chromosomeChr03:129492240..129492461 -
Chr05chromosomeChr05:1461400..1461634 +
Chr05chromosomeChr05:1693619..1693855 +
Chr05chromosomeChr05:1392772..1393000 +
E03chromosomeE03:2035756..2035994 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch14_Dt.02N/A34.5NAU1159View
2W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A53.6NAU1159View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A25.1NAU1159View
Sequence
>NAU1159 ID=NAU1159; Name=NAU1159; organism=Gossypium arboreum; type=genetic_marker; length=223bp
ATTTTGGCAGACCTTCATTCTGCAAATTTAATGCTTCTTACCAAAGAAGG
CCCCCCAAGGGCCAAAATATAATACATATACATATACATATATTTATATA
TTACATGAAAAAAGGAAGGATTATATTTACTGTTATTGAGTACATTGAAC
AAAACATTACAAGTTCTTCCATAAGGATTTTCTCAAGAAGTCATAACTCG
AGGAAAACCAAAACGGGTCATAG