NAU1070, NAU1070 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1070
AliasNAU1070=NAU1071
NAU1071
Genbank IDBQ402529
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AGG)10
PCR ConditionAnnealing temperature: 57
Primer 1NAU1070_F: CCCTCCATAACCAAAAGTTG
Primer 2NAU1070_R: ACCAACAATGGTGACCTCTT
Product Length173
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ402529
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:65574032..65574194 -
A03chromosomeA03:101992286..101992443 -
CM018216.1chromosomeCM018216.1:61694141..61694302 -
CM018204.1chromosomeCM018204.1:99933065..99933243 -
D5_03chromosomeD5_03:5210245..5210411 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:129122390..129122562 -
D10_03chromosomeD10_03:5097782..5097943 +
CM016616.1chromosomeCM016616.1:7335431..7335594 +
At_chr5chromosomeAt_chr5:50989480..50989642 +
At_chr5chromosomeAt_chr5:50006815..50006972 -
D02chromosomeD02:62604553..62604715 -
A03chromosomeA03:94274973..94275130 -
Ghir_D02chromosomeGhir_D02:64372944..64373106 -
Ghir_A03chromosomeGhir_A03:106637739..106637896 -
D02chromosomeD02:64534384..64534546 -
A03chromosomeA03:105548619..105548776 -
D02chromosomeD02:65745826..65745988 -
A03chromosomeA03:103704047..103704204 -
D02chromosomeD02:62861840..62862002 -
A03chromosomeA03:98961217..98961374 -
Dt02chromosomeDt02:64924784..64924945 -
Dt02chromosomeDt02:64933041..64933202 -
At03chromosomeAt03:96047235..96047413 -
scaffold4190supercontigscaffold4190:85931..86109 -
scaffold15736supercontigscaffold15736:120499..120660 -
scaffold15736supercontigscaffold15736:128756..128917 -
Gbar_D02chromosomeGbar_D02:62292061..62292222 -
Gbar_A03chromosomeGbar_A03:99094059..99094236 -
D02chromosomeD02:63598496..63598657 -
A03chromosomeA03:101450414..101450592 -
CM017624.1chromosomeCM017624.1:64648916..64649078 -
CM017612.1chromosomeCM017612.1:100716176..100716348 -
CM017650.1chromosomeCM017650.1:66254405..66254566 -
CM017638.1chromosomeCM017638.1:107894984..107895147 -
CM017702.1chromosomeCM017702.1:63186068..63186229 -
CM017690.1chromosomeCM017690.1:101880965..101881143 -
D02chromosomeD02:66753962..66754124 -
A03chromosomeA03:107309823..107309980 -
Chr03chromosomeChr03:6316182..6316354 +
Chr03chromosomeChr03:6299397..6299569 +
Chr03chromosomeChr03:57885237..57885403 -
B_03chromosomeB_03:6427445..6427601 +
Chr05chromosomeChr05:60860643..60860816 -
chr05chromosomechr05:45776649..45776816 -
Chr_05chromosomeChr_05:39546017..39546283 -
Chr05chromosomeChr05:62436567..62436733 -
Chr05chromosomeChr05:33907910..33908075 -
E03chromosomeE03:118840891..118841055 -
F03chromosomeF03:103081071..103081251 +
Chr03chromosomeChr03:8523897..8524056 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch03_At.03N/A35NAU1070View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A212NAU1070View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A156NAU1070View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch03_At.03N/A14.3NAU1070View
57235 x TM-1, F2:3 (2005)AD_ch03_At.03N/A66.5NAU1070View
6HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A42NAU1070View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch03_At.03N/A103.2NAU1070View
80-153 x sGK9708, RIL (2016)AD_ch03_At.03N/A65.2NAU1070View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A74.1NAU1070View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch03_At.03N/A58.3NAU1070View
110-153 x sGK9708, RIL (2017)AD_ch03_At.03N/A0NAU1070View
12LMY22 x LY343, RIL (2016)chr.3N/A155.6NAU1070View
13LMY22 x LY343, RIL (2020)A03N/A48.65NAU1070View
14TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A35.47NAU1070bView
15TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A80.9NAU1070bView
16TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A44.59NAU1070aView
17TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A81.8NAU1070aView
18TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A51.9NAU1070-400View
19TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A50.11NAU1070-400View
20TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A49.1NAU1070-400View
21TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A11.4NAU1070-165View
22TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A12.78NAU1070-165View
23TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A99.4NAU1070-165View
24CCRI-35 x Yumian-1, RIL (2017)AD_ch03_At.03N/A67.48NAU1070View
25TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A80.9NAU1070bView
26TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A81.83NAU1070aView
27PD 94042 x (AD)4-08, F2 (2016)AD_ch03_At.03N/A75.8NAU1070View
Sequence
>NAU1070 ID=NAU1070; Name=NAU1070; organism=Gossypium arboreum; type=genetic_marker; length=173bp
CCCTCCATAACCAAAAGTTGCATAAGAGAAAAAAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAAATTTTAGAGTCAGAGAAAAAGAAAAGGTGTTTT
AAGCGTTGTTGAAAGGTGGGTTTCCATGTCAAAGTTACAGTGGCTTGTTT
CAGAAGAGGTCACCATTGTTGGT