NAU1047, NAU1047 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1047
Genbank IDBQ403789
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CCA)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU1047_F: GCTTGACTTTCCAATTGCTC
Primer 2NAU1047_R: ATCGTCTTCGGTGAAGGTAG
Product Length174
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ403789
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:46790273..46790446 -
A09chromosomeA09:75291077..75291244 -
CM018223.1chromosomeCM018223.1:44502842..44503015 -
CM018210.1chromosomeCM018210.1:70557183..70557350 -
D5_09chromosomeD5_09:37976544..37976717 -
KI_09chromosomeKI_09:33812446..33812613 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:77280164..77280337 -
D10_09chromosomeD10_09:5755056..5755232 +
CM016622.1chromosomeCM016622.1:8939207..8939377 +
scaffold377.1supercontigscaffold377.1:135985..136152 -
Dt_chr6chromosomeDt_chr6:6035244..6035417 -
scaffold2297_A09supercontigscaffold2297_A09:34834..35001 +
D09chromosomeD09:44634180..44634347 -
Ghir_D09chromosomeGhir_D09:46585637..46585810 -
Ghir_A09chromosomeGhir_A09:74986453..74986620 -
D09chromosomeD09:46017611..46017784 -
A09chromosomeA09:76465019..76465186 -
D09chromosomeD09:46331874..46332047 -
A09chromosomeA09:76515432..76515599 -
D09chromosomeD09:44425932..44426111 -
A09chromosomeA09:73390330..73390497 -
At09chromosomeAt09:72428131..72428298 -
scaffold7777supercontigscaffold7777:150711..150884 +
scaffold3493supercontigscaffold3493:281761..281928 -
Gbar_D09chromosomeGbar_D09:45205725..45205898 -
Gbar_A09chromosomeGbar_A09:71144605..71144772 -
D09chromosomeD09:47658531..47658704 -
A09chromosomeA09:72541830..72541997 -
CM017631.1chromosomeCM017631.1:45400595..45400768 -
CM017618.1chromosomeCM017618.1:72502825..72502992 -
CM017657.1chromosomeCM017657.1:46830918..46831097 -
CM017644.1chromosomeCM017644.1:75371499..75371666 -
CM017709.1chromosomeCM017709.1:46075714..46075887 -
CM017696.1chromosomeCM017696.1:72628019..72628186 -
D09chromosomeD09:48070404..48070577 -
A09chromosomeA09:78270671..78270838 -
Chr09chromosomeChr09:77273769..77273936 -
Chr09chromosomeChr09:80174274..80174447 -
Chr09chromosomeChr09:44199429..44199602 -
B_09chromosomeB_09:63873488..63873661 -
Chr06chromosomeChr06:44752691..44752864 -
chr06chromosomechr06:37043822..37043992 -
Chr_06chromosomeChr_06:31014628..31014804 -
Chr06chromosomeChr06:45979800..45979985 -
Chr06chromosomeChr06:34287468..34287635 -
Chr06chromosomeChr06:25870998..25871165 -
Chr06chromosomeChr06:31770877..31771044 -
E09chromosomeE09:7902957..7903133 +
F09chromosomeF09:64736544..64736714 -
Chr09chromosomeChr09:124309560..124309736 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch23_Dt.09N/A97.1NAU1047View
2AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A158NAU1047View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch23_Dt.09N/A121NAU1047View
4PD6992 x SM3, F2:3 (2005)AD_ch23_Dt.09N/A13.1NAU1047View
560182 x Jun Mian 1, F2:3 (2007)AD_ch23_Dt.09N/A20.3NAU1047View
6Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A64.1NAU1047View
7W10 x TM-1, F2:3 (2015)AD_ch23_Dt.09N/A25.8NAU1047View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A127.6NAU1047View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A31.1NAU1047View
10CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A55.4NAU1047bView
11CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A58.2NAU1047aView
12Prema x 86-1, RIL (2015)AD_ch04_At.04N/A49.63NAU1047-450View
13CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A162.7NAU1047View
Sequence
>NAU1047 ID=NAU1047; Name=NAU1047; organism=Gossypium arboreum; type=genetic_marker; length=174bp
GCTTGACTTTCCAATTGCTCGCCGTCTTCTTAGTCAACCGAGTTGTAAAA
GGAAAGAAACCAGCCGCCACCACCACCACCACCACCATTACCTAAAGCGT
TAAAAATGGCGGAGCAAGCTGTTAAGCTTCGGTGCCAACGAATCGGCTGC
AATGCTACCTTCACCGAAGACGAT