NAU1043, NAU1043 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1043
Genbank IDBQ404189
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TTC)14
PCR ConditionAnnealing temperature: 57
Primer 1NAU1043_F: GTATCCGCCCACAAATAAAG
Primer 2NAU1043_R: GCATCGTGAGAGAAAGTGAA
Product Length238
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ404189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:5219379..5219615 +
A07chromosomeA07:5207246..5207471 +
CM018221.1chromosomeCM018221.1:4907198..4907437 +
CM018208.1chromosomeCM018208.1:5499050..5499266 +
D5_07chromosomeD5_07:4819640..4819858 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:5536887..5537124 +
D10_07chromosomeD10_07:48960455..48960679 -
CM016620.1chromosomeCM016620.1:108941450..108941689 -
Dt_chr7chromosomeDt_chr7:25085387..25085612 +
Dt_chr1chromosomeDt_chr1:41015811..41016047 -
D07chromosomeD07:4689187..4689423 +
A07chromosomeA07:4686920..4687145 +
Ghir_D07chromosomeGhir_D07:5154892..5155128 +
Ghir_A07chromosomeGhir_A07:5574496..5574721 +
D07chromosomeD07:4961260..4961496 +
A07chromosomeA07:5229561..5229786 +
D07chromosomeD07:5108405..5108641 +
A07chromosomeA07:5533143..5533368 +
D07chromosomeD07:4941702..4941937 +
A07chromosomeA07:5588450..5588672 +
Dt07chromosomeDt07:5345650..5345889 +
Dt07chromosomeDt07:5356009..5356223 +
scaffold13041supercontigscaffold13041:120784..121023 +
scaffold13041supercontigscaffold13041:131143..131357 +
scaffold4853supercontigscaffold4853:187560..187776 -
scaffold4853supercontigscaffold4853:176106..176320 -
Gbar_D07chromosomeGbar_D07:5148494..5148730 +
Gbar_A07chromosomeGbar_A07:5464217..5464433 +
D07chromosomeD07:5076555..5076794 +
A07chromosomeA07:5345652..5345868 +
CM017629.1chromosomeCM017629.1:5379596..5379847 +
CM017616.1chromosomeCM017616.1:5267123..5267342 +
CM017655.1chromosomeCM017655.1:5245449..5245676 +
CM017642.1chromosomeCM017642.1:5499083..5499317 +
CM017707.1chromosomeCM017707.1:5133577..5133810 +
CM017694.1chromosomeCM017694.1:5439177..5439408 +
D07chromosomeD07:5218285..5218521 +
A07chromosomeA07:5584468..5584693 +
Chr07chromosomeChr07:5547389..5547611 +
Chr07chromosomeChr07:5540095..5540332 +
Chr07chromosomeChr07:48713278..48713496 -
B_07chromosomeB_07:5765879..5766092 +
Chr01chromosomeChr01:5000583..5000806 +
chr01chromosomechr01:4682244..4682468 +
Chr_01chromosomeChr_01:4995543..4995931 +
Chr01chromosomeChr01:5043920..5044130 +
Chr01chromosomeChr01:3891301..3891516 +
Chr01chromosomeChr01:3597314..3597693 +
Chr01chromosomeChr01:4367872..4368099 +
F07chromosomeF07:4989623..4989833 +
Chr07chromosomeChr07:7881029..7881244 +
Chr01chromosomeNAU1043:1..657 .
Chr01:4788082..4788720 +
scaffold141supercontigNAU1043:1..657 .
scaffold141:356539..357177 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch06_At.06N/A0NAU1043View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch07_At.07N/A137.7NAU1043View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch07_At.07N/A91NAU1043View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch07_At.07N/A56.78NAU1043View
5AD-genome wide Reference Map (2009)AD_ch07_At.07N/A149NAU1043View
6Zhongmiansuo-12 x 8891, RIL (2007)AD_chUN/A0NAU1043View
77235 x TM-1, F2:3 (2005)AD_ch07_At.07N/A1.8NAU1043View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A100.7NAU1043View
9W10 x TM-1, F2:3 (2015)AD_ch07_At.07N/A1.1NAU1043View
10GX1135 x GX100-2, RIL (2016)AD_ch07_At.07N/A43.4NAU1043View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A6.7NAU1043View
12PD6992 x SM3, F2:3 (2005)AD_ch07_At.07N/A0NAU1043aView
13PD6992 x SM3, F2:3 (2005)AD_ch07_At.07N/A41.1NAU1043dView
14PD6992 x SM3, F2:3 (2005)AD_ch07_At.07N/A66.5NAU1043cView
15PD6992 x SM3, F2:3 (2005)AD_ch07_At.07N/A86.4NAU1043eView
16PD6992 x SM3, F2:3 (2005)AD_ch16_Dt.07N/A72.3NAU1043bView
17Prema x 86-1, RIL (2015)AD_ch07_At.07N/A11.87NAU1043-650View
Sequence
>NAU1043 ID=NAU1043; Name=NAU1043; organism=Gossypium arboreum; type=genetic_marker; length=238bp
GTATCCGCCCACAAATAAAGCAAGCAGCTTTATTAATATCTCTTTAATTC
AATTTTCCTTATCTCTCTTTGAGTCTTCAATTGATTGCCCAGATTTTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCTTCAAT
TCACGATCTGCATTAGCTATTTTATCATGCTTTTCTTAAAACTTTTCCTT
CTCTTTTCTTTGTTTTCCTTCACTTTCTCTCACGATGC