NAU1037, NAU1037 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1037
Genbank IDBQ404554
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CTGCCA)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1037_F: CACCTTCACCTAACCATCAA
Primer 2NAU1037_R: GAAGAATTGCGAGAAGAGGA
Product Length178
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ404554
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:60273006..60273177 -
A08chromosomeA08:113553841..113554033 -
CM018222.1chromosomeCM018222.1:56706299..56706470 -
CM018209.1chromosomeCM018209.1:108991724..108991925 -
D5_08chromosomeD5_08:53030518..53030701 -
KI_08chromosomeKI_08:33547499..33547661 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118535072..118535249 -
D10_08chromosomeD10_08:8139540..8139732 +
CM016621.1chromosomeCM016621.1:13718043..13718229 +
scaffold347.1supercontigscaffold347.1:183570..183741 -
scaffold149.1supercontigscaffold149.1:493511..493703 -
D08chromosomeD08:56885271..56885442 -
A08chromosomeA08:94361157..94361349 -
Ghir_D08chromosomeGhir_D08:59488174..59488345 -
Ghir_A08chromosomeGhir_A08:112226994..112227185 -
D08chromosomeD08:60146066..60146237 -
A08chromosomeA08:115147569..115147761 -
D08chromosomeD08:59348887..59349058 -
A08chromosomeA08:115042553..115042745 -
D08chromosomeD08:56626947..56627118 -
A08chromosomeA08:110950778..110950967 -
Dt08chromosomeDt08:59316706..59316877 -
scaffold7445supercontigscaffold7445:57275..57476 -
scaffold7158supercontigscaffold7158:14831..15002 -
Gbar_D08chromosomeGbar_D08:56742686..56742857 -
Gbar_A08chromosomeGbar_A08:109661467..109661668 -
D08chromosomeD08:58668058..58668229 -
A08chromosomeA08:110779648..110779849 -
CM017630.1chromosomeCM017630.1:58226080..58226239 -
CM017617.1chromosomeCM017617.1:109229232..109229415 -
CM017656.1chromosomeCM017656.1:60439002..60439173 -
CM017643.1chromosomeCM017643.1:118645775..118645964 -
CM017708.1chromosomeCM017708.1:57122282..57122453 -
CM017695.1chromosomeCM017695.1:109849891..109850086 -
D08chromosomeD08:60038290..60038461 -
A08chromosomeA08:116937185..116937377 -
Chr08chromosomeChr08:121183015..121183192 -
Chr08chromosomeChr08:122179237..122179412 -
Chr08chromosomeChr08:53917232..53917415 -
B_08chromosomeB_08:93328129..93328306 -
Chr04chromosomeChr04:55333454..55333628 -
chr04chromosomechr04:41535738..41535918 -
Chr_04chromosomeChr_04:38014457..38014634 -
Chr04chromosomeChr04:57678468..57678648 -
Chr04chromosomeChr04:36408567..36408741 -
Chr04chromosomeChr04:30626389..30626554 -
Chr04chromosomeChr04:37009756..37009930 -
E08chromosomeE08:108665210..108665390 +
F08chromosomeF08:95264904..95265086 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch24_Dt.08N/A35.4NAU1037View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch08_At.08N/A88.2NAU1037View
3Hai-7124 x Junmian-1, BC1 (2008) partAD_ch08_At.08N/A28.4NAU1037View
4Hai-7124 x Junmian-1, F2 (2008) partAD_ch08_At.08N/A48NAU1037View
5AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A169NAU1037View
6AD-genome wide Reference Map (2009)AD_ch08_At.08N/A67NAU1037View
7TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A86.43NAU1037View
8Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A25.1NAU1037View
9DH962 x Jinmian-6, F2 (2009)AD_ch08_At.08N/A23.4NAU1037View
10DH962 x Jinmian-6, F2 (2009)AD_ch08_At.08N/A23.4NAU1037View
117235 x TM-1, F2:3 (2005)AD_ch24_Dt.08N/A38NAU1037View
12HS427-10 x TM-1, F2:3 (2005)AD_ch08_At.08N/A19.3NAU1037View
13PD6992 x SM3, F2:3 (2005)AD_ch08_At.08N/A13.1NAU1037View
14Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A94NAU1037View
15DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A17.7NAU1037View
16TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A96.8NAU1037View
17TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch08_At.08N/A28.1NAU1037View
18(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.08N/A73.1NAU1037View
19DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A61.4NAU1037View
20CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A31.5NAU1037View
21CCRI-35 x Yumian-1, RIL (2015)AD_ch08_At.08N/A22.2NAU1037View
22TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A74.2NAU1037-200View
23TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A53.53NAU1037-200View
24TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A79.9NAU1037-200View
25Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A36.7NAU1037/230t(C8)View
26(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A180.9NAU1037bView
27Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A35.9NAU1037bView
28TM-1 x 3-79, RIL (2011)AD_ch08_At.08N/A14.9NAU1037_213/221View
29Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A23.5NAU1037aView
30CCRI-35 x Yumian-1, RIL (2017)AD_ch08_At.08N/A90.11NAU1037View
31TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A96.76NAU1037View
Sequence
>NAU1037 ID=NAU1037; Name=NAU1037; organism=Gossypium arboreum; type=genetic_marker; length=178bp
CACCTTCACCTAACCATCAAAAAGTAAAAAATTGCCAAACAAAAGCTATG
GCATTTTTAAGGTCGCTGACCCCTGCCACTGCCACTGCCATAGCCGCTGC
CTCTGCCTCTGCTCTGCCTGCCGCCTTTGTTTTCTCTTCTTCTTCTTCTT
CTTCCTTCTCCTCTTCTCGCAATTCTTC