NAU1023, NAU1023 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1023
Genbank IDBQ405117
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TTC)11
PCR ConditionAnnealing temperature: 57
Primer 1NAU1023_F: CTGGGATGATTGTGTTTTCA
Primer 2NAU1023_R: CGAGAGGAATTTGTTGTCTG
Product Length211
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ405117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:32714793..32714987 +
A13chromosomeA13:60592385..60592586 +
CM018227.1chromosomeCM018227.1:30097395..30097589 +
CM018214.1chromosomeCM018214.1:65748722..65748926 +
D5_13chromosomeD5_13:29548651..29548846 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:74906647..74906854 +
D10_13chromosomeD10_13:31638143..31638341 +
CM016626.1chromosomeCM016626.1:100460812..100461012 +
At_chr13chromosomeAt_chr13:3182470..3182664 +
At_chr4chromosomeAt_chr4:44089132..44089333 -
At_chr13chromosomeAt_chr13:56272995..56273196 -
D13chromosomeD13:29309855..29310049 +
A13chromosomeA13:38440510..38440711 +
Ghir_D13chromosomeGhir_D13:33035294..33035488 +
Ghir_A13chromosomeGhir_A13:64457630..64457834 +
D13chromosomeD13:34278415..34278609 +
A13chromosomeA13:67608533..67608734 +
D13chromosomeD13:33470318..33470512 +
A13chromosomeA13:65478595..65478796 +
D13chromosomeD13:30117477..30117671 +
A13chromosomeA13:64184345..64184546 +
scaffold10299supercontigscaffold10299:84979..85183 -
Gbar_D13chromosomeGbar_D13:29881031..29881225 +
Gbar_A13chromosomeGbar_A13:66755185..66755389 +
D13chromosomeD13:31482583..31482777 +
A13chromosomeA13:69963659..69963863 +
CM017635.1chromosomeCM017635.1:31300737..31300931 +
CM017622.1chromosomeCM017622.1:67053577..67053781 +
CM017661.1chromosomeCM017661.1:33548573..33548768 +
CM017648.1chromosomeCM017648.1:69443251..69443455 +
CM017713.1chromosomeCM017713.1:31187686..31187880 +
CM017700.1chromosomeCM017700.1:68334892..68335093 +
D13chromosomeD13:33976338..33976532 +
A13chromosomeA13:67649936..67650137 +
Chr13chromosomeChr13:47918143..47918350 -
Chr13chromosomeChr13:73962424..73962631 +
Chr13chromosomeChr13:29741461..29741656 +
Chr13chromosomeChr13:30697893..30698088 +
Chr_13chromosomeChr_13:21018229..21018427 +
Chr13chromosomeChr13:32950410..32950605 +
Chr13chromosomeChr13:21187037..21187232 +
Chr13chromosomeChr13:16034640..16034835 +
Chr13chromosomeChr13:20466499..20466694 +
F13chromosomeF13:56457206..56457413 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A84.3NAU1023View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A87.01NAU1023View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A35.91NAU1023View
4AD-genome wide Reference Map (2009)AD_ch13_At.13N/A104NAU1023View
5H18 x TM-1, F2 (2005)AD_ch13_At.13N/A87.8NAU1023View
6TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A59.5NAU1023-335View
7TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A59.96NAU1023-335View
8TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A77.1NAU1023-335View
Sequence
>NAU1023 ID=NAU1023; Name=NAU1023; organism=Gossypium arboreum; type=genetic_marker; length=211bp
CTGGGATGATTGTGTTTTCATTGTAAGATTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCCCTTTTTATGTAATATTCTCAGTTTTTTCGTTCTTTCT
TTCTTTTACCTGGTAATTGATATCTATTTTTATGTTGATTTTCAGGACCT
TTTTGATAAAAATTTAGTGTACTTGTTTAGATCTTTAAGGTCAGACAACA
AATTCCTCTCG