NAU1019, NAU1019 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1019
Genbank IDBQ405360
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GCGTCA)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1019_F: ACCTGTTGGGTCTGCTAAAG
Primer 2NAU1019_R: CCGGAACACGATTCTTCTAC
Product Length249
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ405360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:60963886..60964115 +
A13chromosomeA13:100671369..100671622 +
CM018227.1chromosomeCM018227.1:56621483..56621712 +
CM018214.1chromosomeCM018214.1:104420249..104420502 +
KI_13chromosomeKI_13:40336808..40337037 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:120087868..120088115 +
D10_13chromosomeD10_13:57687278..57687507 +
CM016626.1chromosomeCM016626.1:155411890..155412121 +
scaffold4523.1supercontigscaffold4523.1:38175..38428 +
scaffold4028.1supercontigscaffold4028.1:30262..30491 -
D13chromosomeD13:56823929..56824158 +
A13chromosomeA13:76650159..76650412 +
Ghir_D13chromosomeGhir_D13:59916666..59916895 +
Ghir_A13chromosomeGhir_A13:104467835..104468088 +
D13chromosomeD13:60854172..60854401 +
A13chromosomeA13:106632110..106632363 +
D13chromosomeD13:60095489..60095718 +
A13chromosomeA13:104945809..104946062 +
D13chromosomeD13:56743993..56744222 +
A13chromosomeA13:103408682..103408935 +
Dt13chromosomeDt13:58818133..58818386 +
Dt13chromosomeDt13:58808042..58808271 +
At13chromosomeAt13:83416946..83417175 +
scaffold4379supercontigscaffold4379:88817..89046 +
scaffold2890supercontigscaffold2890:269740..269993 +
scaffold2890supercontigscaffold2890:259649..259878 +
Gbar_D13chromosomeGbar_D13:56421112..56421341 +
Gbar_A13chromosomeGbar_A13:105309184..105309437 +
D13chromosomeD13:57544528..57544757 +
A13chromosomeA13:108825571..108825824 +
CM017635.1chromosomeCM017635.1:57518589..57518818 +
CM017622.1chromosomeCM017622.1:106524628..106524893 +
CM017661.1chromosomeCM017661.1:60722386..60722615 +
CM017648.1chromosomeCM017648.1:111711792..111712051 +
CM017713.1chromosomeCM017713.1:57238650..57238879 +
CM017700.1chromosomeCM017700.1:106667187..106667440 +
D13chromosomeD13:61233956..61234185 +
A13chromosomeA13:107700357..107700610 +
Chr13chromosomeChr13:113730827..113731074 +
Chr13chromosomeChr13:118428379..118428626 +
Chr13chromosomeChr13:55673145..55673374 +
B_13chromosomeB_13:5364717..5364970 -
Chr13chromosomeChr13:56819665..56819894 +
chr13chromosomechr13:42166948..42167203 +
Chr13chromosomeChr13:59796735..59796964 +
Chr13chromosomeChr13:39738356..39738597 +
Chr13chromosomeChr13:30746217..30746446 +
Chr13chromosomeChr13:38703895..38704259 +
E13chromosomeE13:110394159..110394394 +
F13chromosomeF13:92150040..92150269 +
Chr13chromosomeChr13:3290521..3290756 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A2.5NAU1019View
Sequence
>NAU1019 ID=NAU1019; Name=NAU1019; organism=Gossypium arboreum; type=genetic_marker; length=249bp
ACCTGTTGGGTCTGCTAAAGATCCGTCTGGGTCTTCTCCATCTAAACCTT
CTGATCAACCCTCGATTCGTCGGAGGAATATACCGAATGGATCGGCTGCG
TCTGCTTCTGCTTCTTCTCCGGCGTCAGCGTCAGCGTCAGCGTCCGCCGC
TGGGGGTACCTACACCGAAGAACANATCGTACTCGTGAAGCGAATCAGGA
TAAAGACGGATTATTATGAGATTTTGGGGGTAGAAGAATCGTGTTCCGG