NAU1014, NAU1014 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1014
Genbank IDBQ405578
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCA)11
PCR ConditionAnnealing temperature: 57
Primer 1NAU1014_F: GCCTCCACTTGTTTTCTACC
Primer 2NAU1014_R: GGCACCCATATCAGAAGAAG
Product Length180
Restriction EnzymeEcoRI; XhoI
PolymorphismP_ NAU1014
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ405578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A11chromosomeA11:69283485..69283648 +
D11chromosomeD11:47367894..47368061 -
CM018225.1chromosomeCM018225.1:45563828..45563995 -
CM018212.1chromosomeCM018212.1:77242277..77242462 -
D5_11chromosomeD5_11:22803032..22803199 +
KI_11chromosomeKI_11:33933728..33933895 -
tig00014224_CRI-A2_v1.0.a1chromosometig00014224_CRI-A2_v1.0.a1:193294..193473 -
D10_11chromosomeD10_11:44141838..44142008 -
CM016624.1chromosomeCM016624.1:95213155..95213322 +
At_chr4chromosomeAt_chr4:50040216..50040379 +
scaffold2918_A11supercontigscaffold2918_A11:482754..482917 -
D11chromosomeD11:43005589..43005756 -
Ghir_A11chromosomeGhir_A11:85565866..85566029 +
Ghir_D11chromosomeGhir_D11:47785969..47786136 -
A11chromosomeA11:84243181..84243344 +
D11chromosomeD11:47467571..47467738 -
A11chromosomeA11:81928787..81928950 +
D11chromosomeD11:47782717..47782884 -
A11chromosomeA11:79828456..79828619 +
D11chromosomeD11:45079156..45079323 -
Dt11chromosomeDt11:46474910..46475077 -
scaffold9696supercontigscaffold9696:74524..74709 -
scaffold9696supercontigscaffold9696:72361..72531 -
scaffold5855supercontigscaffold5855:344500..344667 -
Gbar_D11chromosomeGbar_D11:45267582..45267749 -
Gbar_A11chromosomeGbar_A11:75314570..75314755 -
A11chromosomeA11:79602558..79602743 +
D11chromosomeD11:47788890..47789057 -
CM017633.1chromosomeCM017633.1:47411078..47411245 -
CM017620.1chromosomeCM017620.1:80733670..80733846 -
CM017659.1chromosomeCM017659.1:48433779..48433949 -
CM017646.1chromosomeCM017646.1:87579479..87579661 -
CM017711.1chromosomeCM017711.1:45598882..45599049 -
CM017698.1chromosomeCM017698.1:77362337..77362519 -
D11chromosomeD11:47638965..47639132 -
A11chromosomeA11:84296342..84296505 -
Chr11chromosomeChr11:87244348..87244533 -
Chr11chromosomeChr11:84285533..84285712 -
Chr11chromosomeChr11:21127248..21127415 +
B_11chromosomeB_11:66204308..66204475 -
Chr07chromosomeChr07:45164514..45164681 -
chr03chromosomechr03:11265763..11265933 +
Chr_03chromosomeChr_03:8690192..8690362 +
Chr07chromosomeChr07:45461584..45461772 -
Chr03chromosomeChr03:9182414..9182584 +
Chr03chromosomeChr03:7917246..7917413 +
Chr03chromosomeChr03:9911922..9912095 +
E11chromosomeE11:73659426..73659596 -
F11chromosomeF11:65581786..65581944 -
Chr11chromosomeChr11:63041898..63042068 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch11_At.11N/A0NAU1014View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A98NAU1014View
3TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A67.3NAU1014View
4TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A105.6NAU1014View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch11_At.11N/A22.4NAU1014View
67235 x TM-1, F2:3 (2005)AD_ch11_At.11N/A0NAU1014View
7Yumian-1 x T586, RIL (2015)AD_ch11_At.11N/A72.7NAU1014View
8Yumian-1 x 7235, RIL (2015)AD_ch11_At.11N/A63.7NAU1014View
9TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A109.3NAU1014View
10GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A5.1NAU1014View
11GX1135 x GX100-2, RIL (2016)AD_ch11_At.11N/A196.6NAU1014View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A151.4NAU1014View
13TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A73NAU1014-185View
14TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A74.11NAU1014-185View
15TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A88.4NAU1014-185View
16TM-1 x 3-79, RIL (2011)AD_ch11_At.11N/A31.9NAU1014_276bView
17Prema x 86-1, RIL (2015)AD_ch11_At.11N/A16.09NAU1014-150View
18TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A109.33NAU1014View
19PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A113.3NAU1014View
Sequence
>NAU1014 ID=NAU1014; Name=NAU1014; organism=Gossypium arboreum; type=genetic_marker; length=180bp
GCCTCCACTTGTTTTCTACCCCCCATCTCCTTTAATCCTATCTCATCATC
ATCATCATCATCATCATCATCATCATTTATGGGTCTTGCTCTGGTAAAAA
CCCATCATCAAGGTAGCTTTATTATGGGTCAGTTTAGACGGTTGGTTATC
AACTGTTCAGCTTCTTCTGATATGGGTGCC