NAU0998, NAU0998 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0998
AliasNAU998
Genbank IDBQ406381
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCATG)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU998_F: CTCTCTCTCACACACGCACT
Primer 2NAU998_R: CTGGCCAAGTGACACAATTA
Product Length166
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ406381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:64763240..64763397 -
A03chromosomeA03:101151218..101151383 -
CM018216.1chromosomeCM018216.1:61084895..61085057 -
CM018204.1chromosomeCM018204.1:99140776..99140955 -
D5_03chromosomeD5_03:5808574..5808757 +
KI_03chromosomeKI_03:37780837..37781010 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:128304676..128304840 -
D10_03chromosomeD10_03:5746197..5746388 +
CM016616.1chromosomeCM016616.1:8472191..8472360 +
Dt_chr5chromosomeDt_chr5:14259486..14259641 +
At_chr5chromosomeAt_chr5:47920218..47920383 +
D02chromosomeD02:61958671..61958828 -
A03chromosomeA03:93482494..93482659 -
Ghir_D02chromosomeGhir_D02:63763210..63763370 -
Ghir_A03chromosomeGhir_A03:105816628..105816791 -
D02chromosomeD02:63956414..63956571 -
A03chromosomeA03:104742751..104742916 -
D02chromosomeD02:65115712..65115867 -
A03chromosomeA03:102893533..102893696 -
D02chromosomeD02:62231603..62231760 -
A03chromosomeA03:98157506..98157671 -
scaffold47345supercontigscaffold47345:46964..47143 +
scaffold4281supercontigscaffold4281:169822..169984 +
scaffold4281supercontigscaffold4281:167521..167683 +
scaffold4281supercontigscaffold4281:163991..164153 +
Gbar_D02chromosomeGbar_D02:61646669..61646831 -
Gbar_A03chromosomeGbar_A03:98301888..98302065 -
D02chromosomeD02:63011587..63011749 -
A03chromosomeA03:100667110..100667289 -
CM017624.1chromosomeCM017624.1:64001634..64001791 -
CM017612.1chromosomeCM017612.1:99922283..99922449 -
CM017650.1chromosomeCM017650.1:65635651..65635808 -
CM017638.1chromosomeCM017638.1:107069567..107069732 -
CM017702.1chromosomeCM017702.1:62560347..62560509 -
CM017690.1chromosomeCM017690.1:101065848..101066023 -
D02chromosomeD02:66109670..66109825 -
A03chromosomeA03:106497824..106497989 -
Chr03chromosomeChr03:7189939..7190100 +
Chr03chromosomeChr03:7117352..7117517 +
Chr03chromosomeChr03:57287638..57287821 -
B_03chromosomeB_03:7268149..7268339 +
Chr05chromosomeChr05:60218550..60218713 -
chr05chromosomechr05:45326675..45326948 -
Chr05chromosomeChr05:61851345..61851510 -
Chr05chromosomeChr05:39580746..39580973 -
Chr05chromosomeChr05:33540169..33540348 -
Chr05chromosomeChr05:41186031..41186200 -
E03chromosomeE03:117896334..117896513 -
F03chromosomeF03:103914796..103914971 +
Chr03chromosomeChr03:10143700..10143867 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch03_At.03N/A36.6NAU998View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch03_At.03N/A0NAU998View
37235 x TM-1, F2:3 (2005)AD_ch03_At.03N/A80.1NAU998View
4HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A24.5NAU998View
5PD6992 x SM3, F2:3 (2005)AD_ch03_At.03N/A17.3NAU998View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch03_At.03N/A96.8NAU998View
7(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.02N/A108.5NAU998View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A76.9NAU998View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A101.3NAU998View
10LMY22 x LY343, RIL (2020)A03N/A50.1NAU998View
11AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A186nau0998View
12AD-genome wide Reference Map (2009)AD_ch03_At.03N/A173nau0998View
13TM-1 x 3-79, RIL (2006)AD_ch03_At.03N/A97.5nau0998View
14Yumian-1 x T586, F2:7 (2008)AD_ch14_Dt.02N/A36.5nau0998View
15Yumian-1 x T586, RIL (2006)AD_ch14_Dt.02N/A55.6nau0998View
16Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A110.4nau0998View
17TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A37.71NAU0998bView
18TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A78.7NAU0998bView
19TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A46.55NAU0998aView
20TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A79.9NAU0998aView
21TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A46.6NAU998-160View
22TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A48.11NAU998-160View
23TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A64.3NAU998-160View
24Yumian-1 x T586, RIL (2009)AD_ch14_Dt.02N/A26.7NAU0998/200y(C14)View
25TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A78.66NAU0998bView
26TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A79.87NAU0998aView
Sequence
>NAU0998 ID=NAU0998; Name=NAU0998; organism=Gossypium arboreum; type=genetic_marker; length=166bp
CTCTCTCTCACACACGCACTCACTCCGTCTCTCATGTCATGTCATGTCAT
GCAAGTAGCACCTAAGCTTTTAAGTTTTTAACCCCTCTCTGCGCTCTCTC
TCTCTCTCTCTCTCACACACACTCCCTTCACCCCACGACATTTGTTTAAT
TGTGTCACTTGGCCAG