NAU0913, NAU0913 (genetic_marker) Gossypium arboreum

Marker Overview


Name	NAU0913
Alias	NAU913 NAU0913=NAU2291 NAU0913=NAU2291=RC(NAU0974) NAU0974 NAU2291
Genbank ID	BQ410818
Type	SSR
Species	Gossypium arboreum
Germplasm	AKA 8400 AKA 8400
Source Type	EST
Repeat Motif	(AT)9
PCR Condition	Annealing temperature: 57
Primer 1	NAU913_F: CCCATGATCAAAAGACAACA
Primer 2	NAU913_R: GCTTAAAGATCGAGGACGAA
Product Length	203
Restriction Enzyme	EcoRI; XhoI
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BQ410818

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A04	chromosome	A04:79236309..79236505 -
CM018205.1	chromosome	CM018205.1:77706796..77706994 -
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:3888200..3888402 +
D10_04	chromosome	D10_04:49195532..49195736 -
Dt_chr8	chromosome	Dt_chr8:2358734..2358930 +
scaffold34072	supercontig	scaffold34072:493..689 +
Ghir_A04	chromosome	Ghir_A04:81693390..81693586 -
A04	chromosome	A04:84443257..84443453 -
A04	chromosome	A04:81942169..81942365 -
A04	chromosome	A04:77613952..77614150 -
At04	chromosome	At04:62877837..62878035 -
scaffold9660	supercontig	scaffold9660:91162..91360 -
Gbar_A04	chromosome	Gbar_A04:78183337..78183535 -
A04	chromosome	A04:78601762..78601960 -
CM017613.1	chromosome	CM017613.1:80227354..80227550 -
CM017639.1	chromosome	CM017639.1:88727787..88727986 -
CM017691.1	chromosome	CM017691.1:78674141..78674341 -
A04	chromosome	A04:85683101..85683297 -
Chr04	chromosome	Chr04:105638514..105638714 -
Chr04	chromosome	Chr04:107397754..107397958 -
B_02	chromosome	B_02:3820650..3820847 +
Chr12	chromosome	Chr12:24159716..24159912 -
Chr04	chromosome	Chr04:173857336..173857532 -

Germplasm


Stock Name	Type
AKA 8400	accession
AKA 8400	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x T586, RIL (2006)	AD_ch04_At.04	N/A	25.2	NAU0913a	View
2	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch22_Dt.04	N/A	28.6	NAU0913a	View
3	Yumian-1 x T586, RIL (2015)	AD_ch04_At.04	N/A	57.2	NAU0913a	View
4	Yumian-1 x 7235, RIL (2015)	AD_ch04_At.04	N/A	50.5	NAU0913a	View
5	CCRI-35 x Yumian-1, RIL (2015)	AD_ch04_At.04	N/A	46.5	NAU0913a	View
6	Yumian-1 x T586, RIL (2006)	AD_ch04_At.04	N/A	13.1	NAU0913b	View
7	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch04_At.04	N/A	58.3	NAU0913b	View
8	Yumian-1 x 7235, RIL (2015)	AD_ch22_Dt.04	N/A	74	NAU0913b	View
9	CCRI-35 x Yumian-1, RIL (2015)	AD_ch22_Dt.04	N/A	0	NAU0913b	View
10	Yumian-1 x T586, RIL (2009)	AD_ch04_At.04	N/A	41.6	NAU0913/200y	View
11	Yumian-1 x T586, RIL (2009)	AD_ch04_At.04	N/A	23.1	NAU0913/220y	View
12	HS427-10 x TM-1, F2:3 (2005)	AD_chU	N/A	0	NAU913	View
13	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch22_Dt.04	N/A	37.3	NAU913	View
14	0-153 x sGK9708, RIL (2016)	AD_ch04_At.04	N/A	143.2	NAU0913	View
15	CCRI-35 x Yumian-1, RIL (2017)	AD_ch04_At.04	N/A	84.97	NAU0913	View
16	CCRI-35 x Yumian-1, RIL (2017)	AD_ch22_Dt.04	N/A	105.14	NAU0913	View

Sequence

>NAU0913 ID=NAU0913; Name=NAU0913; organism=Gossypium arboreum; type=genetic_marker; length=203bp
CCCATGATCAAAAGACAACAAAACATGTGTGCATGGCGGTGGACACGGCG
GTGATGGGAAAATATAAGGGAAATTTTATTCAACACTACCAAAACAAAAA
CCCAAAGGAAAACAACAGCAACAAAACAGTTTATTTTTATAATAACACCA
TCAGCATGCATATATATATATATATATAGCCTCTTCGTCCTCGATCTTTA
AGC

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NAU0913, NAU0913 (genetic_marker) Gossypium arboreum