NAU0895, NAU0895 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0895
AliasNAU895
Genbank IDBQ411825
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(ACAT)10
PCR ConditionAnnealing temperature: 57
Primer 1NAU895_F: CATGATGCACACTTCACACA
Primer 2NAU895_R: CGGTTAAGCTTCCAGACATT
Product Length202
Restriction EnzymeEcoRI; XhoI
PolymorphismP_ NAU0895
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ411825
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:354388..354577 +
A02chromosomeA02:90051651..90051856 -
CM018217.1chromosomeCM018217.1:319537..319730 +
CM018203.1chromosomeCM018203.1:99541292..99541477 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:442870..443071 +
CM016615.1chromosomeCM016615.1:343508..343696 +
scaffold1977.1supercontigscaffold1977.1:310708..310897 +
At_chr4chromosomeAt_chr4:23362330..23362535 -
D03chromosomeD03:311928..312121 +
A02chromosomeA02:83057705..83057910 -
Ghir_D03chromosomeGhir_D03:315873..316062 +
Ghir_A02chromosomeGhir_A02:107705898..107706103 -
D03chromosomeD03:317524..317713 +
A02chromosomeA02:107903525..107903730 -
D03chromosomeD03:313063..313252 +
A02chromosomeA02:105363308..105363513 -
D03chromosomeD03:317898..318087 +
A02chromosomeA02:103944428..103944633 -
At02chromosomeAt02:89471097..89471282 -
scaffold28823supercontigscaffold28823:59171..59364 -
scaffold23613supercontigscaffold23613:146546..146731 -
Gbar_D03chromosomeGbar_D03:312350..312543 +
Gbar_A02chromosomeGbar_A02:99834962..99835147 -
D03chromosomeD03:319672..319861 +
A02chromosomeA02:101772449..101772634 -
CM017625.1chromosomeCM017625.1:317751..317940 +
CM017611.1chromosomeCM017611.1:104749307..104749488 -
CM017651.1chromosomeCM017651.1:371976..372161 +
CM017637.1chromosomeCM017637.1:109541231..109541436 -
CM017703.1chromosomeCM017703.1:341670..341851 +
CM017689.1chromosomeCM017689.1:101923852..101924025 -
D03chromosomeD03:345905..346094 +
A02chromosomeA02:107850525..107850730 -
Chr02chromosomeChr02:92559455..92559648 -
Chr02chromosomeChr02:102160497..102160698 -
Chr_03chromosomeChr_03:276842..277023 +
Chr03chromosomeChr03:251358..251543 +
Chr03chromosomeChr03:295547..295740 +
F02chromosomeF02:277101..277294 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch02_At.02N/A171.4NAU895aView
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch02_At.02N/A98.9NAU0895View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A11NAU0895View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A11.7NAU0895View
5Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A141.2NAU0895View
6Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A97.9NAU0895View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A0NAU0895View
8TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A3.67NAU0895aView
9TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A3.7NAU0895aView
10TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A0NAU0895bView
11TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A126.4NAU0895bView
12TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A3NAU895-260View
13TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A111.63NAU895-260View
14TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A108.2NAU895-260View
15HS427-10 x TM-1, F2:3 (2005)AD_ch02_At.02N/A0NAU895View
16Prema x 86-1, RIL (2015)AD_ch02_At.02N/A4.04NAU895View
17TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A1.4NAU895View
18GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A3.3NAU895View
19GX1135 x GX100-2, RIL (2016)AD_ch04_At.04N/A129.2NAU895View
20(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.03N/A110.7NAU895View
21CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A119.4NAU0895View
22TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A3.66NAU0895aView
23TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A126.42NAU0895bView
Sequence
>NAU0895 ID=NAU0895; Name=NAU0895; organism=Gossypium arboreum; type=genetic_marker; length=202bp
CATGATGCACACTTCACACACATGTACACACTTGCACAGACATACATACA
TACATACATACATACATACATACATACATACTTTCTTACAACGACGCCCA
TTTTTTGCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTG
CAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAAC
CG