NAU0879, NAU0879 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0879
AliasNAU879
Genbank IDBQ413089
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)11
PCR ConditionAnnealing temperature: 57
Primer 1NAU879_F: AGGAACCGATTCAAAGCTAA
Primer 2NAU879_R: TTTCCCCATTCTTGGTTAAG
Product Length203
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ413089
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:3224896..3225084 -
A05chromosomeA05:3583072..3583268 -
CM018219.1chromosomeCM018219.1:3011315..3011507 -
CM018206.1chromosomeCM018206.1:3542697..3542889 -
D5_05chromosomeD5_05:2832585..2832775 -
KI_05chromosomeKI_05:2594826..2595011 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3467838..3468040 -
D10_05chromosomeD10_05:57666094..57666280 +
CM016626.1chromosomeCM016626.1:4955262..4955452 -
Dt_chr9chromosomeDt_chr9:66326754..66326942 +
At_chr9chromosomeAt_chr9:50754622..50754838 +
scaffold1240_A05supercontigscaffold1240_A05:59447..59643 -
D05chromosomeD05:3064047..3064235 -
Ghir_D05chromosomeGhir_D05:3199581..3199769 -
Ghir_A05chromosomeGhir_A05:3583324..3583524 -
D05chromosomeD05:2999757..2999945 -
A05chromosomeA05:3458654..3458850 -
D05chromosomeD05:3109783..3109971 -
A05chromosomeA05:3557440..3557636 -
D05chromosomeD05:2970085..2970273 -
A05chromosomeA05:3961978..3962174 -
scaffold10000supercontigscaffold10000:477857..478049 +
scaffold3667supercontigscaffold3667:33154..33346 -
Gbar_D05chromosomeGbar_D05:3100476..3100668 -
Gbar_A05chromosomeGbar_A05:3232160..3232352 -
D05chromosomeD05:3251524..3251716 -
A05chromosomeA05:3713334..3713526 -
CM017627.1chromosomeCM017627.1:3081429..3081615 -
CM017614.1chromosomeCM017614.1:3544992..3545182 -
CM017653.1chromosomeCM017653.1:3247115..3247303 -
CM017640.1chromosomeCM017640.1:3609823..3610013 -
CM017705.1chromosomeCM017705.1:3072642..3072836 -
CM017692.1chromosomeCM017692.1:3510276..3510466 -
D05chromosomeD05:3134250..3134438 -
A05chromosomeA05:3666792..3666988 -
Chr05chromosomeChr05:3770038..3770236 -
Chr05chromosomeChr05:3324443..3324646 -
Chr05chromosomeChr05:2838030..2838220 -
B_05chromosomeB_05:82715348..82715552 +
Chr09chromosomeChr09:2970461..2970647 -
chr09chromosomechr09:2800891..2801083 -
Chr_09chromosomeChr_09:3123453..3123749 -
Chr09chromosomeChr09:3044611..3044817 -
Chr09chromosomeChr09:2823800..2823994 -
Chr09chromosomeChr09:2250513..2250697 -
Chr09chromosomeChr09:2785995..2786183 -
E05chromosomeE05:3837728..3837919 -
F05chromosomeF05:3003485..3003686 -
Chr13chromosomeChr13:195150340..195150544 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch10_At.10N/A0NAU879View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A4.8NAU879View
37235 x TM-1, F2:3 (2005)AD_ch10_At.10N/A26.9NAU879View
4HS427-10 x TM-1, F2:3 (2005)AD_ch10_At.10N/A0NAU879View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A0NAU879View
Sequence
>NAU0879 ID=NAU0879; Name=NAU0879; organism=Gossypium arboreum; type=genetic_marker; length=203bp
AGGAACCGATTCAAAGCTAATCTTTGGGGTGGCTTGACAAGTCTATCCTA
AAATAGCTTGTTCTCAGCTATATATATATATATATATATATTTACCTAAT
ACAAAAAAACAAAGAGAATGGTCCCAATGTCATCGAAAACATGGCACAAA
TAACTCCAAAAAATTGTTCATCCCGGCTAGAGGCTTAACCAAGAATGGGG
AAA