NAU0862, NAU0862 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0862
AliasNAU862
Genbank IDBQ414131
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CGGCTC)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU862_F: AAGAACCACCACCTCCACT
Primer 2NAU862_R: TGGTTATCCAACACCGTCTA
Product Length200
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ414131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:69338716..69338897 +
A03chromosomeA03:107228074..107228267 +
CM018216.1chromosomeCM018216.1:65517196..65517377 +
CM018204.1chromosomeCM018204.1:104572805..104573004 +
D5_03chromosomeD5_03:1366943..1367123 -
KI_03chromosomeKI_03:40826517..40826698 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134157275..134157474 +
D10_03chromosomeD10_03:1300544..1300725 -
CM016616.1chromosomeCM016616.1:2123831..2124029 -
CM016616.1chromosomeCM016616.1:2127846..2128032 -
Dt_chr5chromosomeDt_chr5:9472977..9473158 +
scaffold190.1supercontigscaffold190.1:722192..722385 -
D02chromosomeD02:65931526..65931707 +
A03chromosomeA03:98751201..98751394 +
Ghir_D02chromosomeGhir_D02:68400970..68401151 +
Ghir_A03chromosomeGhir_A03:111521613..111521806 +
D02chromosomeD02:68397834..68398015 +
A03chromosomeA03:110136113..110136306 +
D02chromosomeD02:69736198..69736379 +
A03chromosomeA03:108627236..108627429 +
D02chromosomeD02:66852120..66852301 +
A03chromosomeA03:103897870..103898063 +
At03chromosomeAt03:100585185..100585384 +
scaffold50168supercontigscaffold50168:8609..8808 +
scaffold28684supercontigscaffold28684:29017..29198 -
Gbar_D02chromosomeGbar_D02:66261615..66261796 +
Gbar_A03chromosomeGbar_A03:103783436..103783635 +
D02chromosomeD02:67455007..67455188 +
A03chromosomeA03:106127140..106127339 +
CM017624.1chromosomeCM017624.1:68504666..68504847 +
CM017612.1chromosomeCM017612.1:105448655..105448842 +
CM017650.1chromosomeCM017650.1:70162321..70162502 +
CM017638.1chromosomeCM017638.1:112593836..112594023 +
CM017702.1chromosomeCM017702.1:67072008..67072189 +
CM017690.1chromosomeCM017690.1:106584957..106585174 +
D02chromosomeD02:70818895..70819076 +
A03chromosomeA03:112215923..112216116 +
Chr03chromosomeChr03:1390459..1390658 -
Chr03chromosomeChr03:1549269..1549468 -
Chr03chromosomeChr03:61709890..61710071 +
B_03chromosomeB_03:1580844..1581023 -
Chr05chromosomeChr05:64741092..64741273 +
chr05chromosomechr05:49323518..49323699 +
Chr_05chromosomeChr_05:42506066..42506247 +
Chr05chromosomeChr05:66216235..66216416 +
Chr05chromosomeChr05:43480259..43480440 +
Chr05chromosomeChr05:36588415..36588596 +
Chr05chromosomeChr05:45142977..45143158 +
E03chromosomeE03:124152570..124152750 +
F03chromosomeF03:108869399..108869579 +
Chr03chromosomeChr03:1584471..1584649 -
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A106.88NAU0862View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A70.43NAU0862View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A196NAU0862View
4TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A8.74NAU0862View
5Yumian-1 x T586, RIL (2006)AD_ch03_At.03N/A4.2NAU0862View
6Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A12.6NAU0862View
7TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A107.6NAU0862View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A72.2NAU0862View
9TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A9.2NAU862-200View
10TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A9.73NAU862-200View
11TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A12.4NAU862-200View
12Yumian-1 x T586, RIL (2009)AD_ch03_At.03N/A4.2NAU0862/220t(C3)View
13T582 x Hai-7124, F2 (2010)AD_ch03_At.03N/A9.2NAU862View
14PD6992 x SM3, F2:3 (2005)AD_ch03_At.03N/A9.8NAU862View
15GX1135 x GX100-2, RIL (2016)AD_ch16_Dt.07N/A93.4NAU862View
16CCRI-35 x Yumian-1, RIL (2017)AD_ch14_Dt.02N/A138.6NAU0862View
17TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A107.63NAU0862View
18PD 94042 x (AD)4-08, F2 (2016)AD_ch03_At.03N/A24.7NAU862View
Sequence
>NAU0862 ID=NAU0862; Name=NAU0862; organism=Gossypium arboreum; type=genetic_marker; length=200bp
AAGAACCACCACCTCCACTGCCAAATGATGATTGCCTGTTCCAAGGTTTG
GCCCCACCAAAACCTGATTCGTTACCCTGGGAGCTTCTATCTCTTTGATC
AGAAAACTTGTCTCCGTTGTGATTTGGTTCGGCTCCGGCTCCGGCTCCGG
CTCCGGCTCCTCCCCACATGCTTGAGTTTCTAGACGGTGTTGGATAACCA