NAU0751, NAU0751 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0751
AliasNAU751
NAU0751=NAU1401
NAU1401
Genbank IDBQ415304
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)10
PCR ConditionAnnealing temperature: 57
Primer 1NAU751_F: AATGCCACGGAGTACAATTT
Primer 2NAU751_R: TGCAAGAGTGGAAGTTGAAA
Product Length155
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ415304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:11756448..11756592 +
A07chromosomeA07:14524413..14524551 +
CM018221.1chromosomeCM018221.1:11191171..11191325 +
CM018208.1chromosomeCM018208.1:14477001..14477139 +
tig00019444_CRI-A2_v1.0.a1chromosometig00019444_CRI-A2_v1.0.a1:122631..122785 +
D10_07chromosomeD10_07:42915986..42916128 -
CM016620.1chromosomeCM016620.1:96253945..96254103 -
scaffold913.1supercontigscaffold913.1:275149..275287 -
Dt_chr1chromosomeDt_chr1:45931860..45932004 -
D07chromosomeD07:11229813..11229957 +
A07chromosomeA07:13768720..13768858 +
Ghir_D07chromosomeGhir_D07:11667468..11667612 +
Ghir_A07chromosomeGhir_A07:14786546..14786684 +
D07chromosomeD07:11155939..11156083 +
A07chromosomeA07:14170822..14170960 +
D07chromosomeD07:11632942..11633084 +
A07chromosomeA07:14779717..14779855 +
D07chromosomeD07:11521875..11522019 +
A07chromosomeA07:14731770..14731908 +
Dt07chromosomeDt07:12676087..12676239 +
At07chromosomeAt07:14927066..14927204 +
scaffold23657supercontigscaffold23657:46896..47048 +
scaffold1552supercontigscaffold1552:331706..331844 +
Gbar_D07chromosomeGbar_D07:11595641..11595795 +
Gbar_A07chromosomeGbar_A07:14464111..14464249 +
D07chromosomeD07:11315152..11315306 +
A07chromosomeA07:14570736..14570874 +
CM017616.1chromosomeCM017616.1:14421020..14421160 +
CM017655.1chromosomeCM017655.1:11812913..11813073 +
CM017642.1chromosomeCM017642.1:14459595..14459737 +
CM017707.1chromosomeCM017707.1:11520423..11520569 +
CM017694.1chromosomeCM017694.1:14710535..14710671 +
D07chromosomeD07:11823990..11824134 +
A07chromosomeA07:14930398..14930536 +
Chr07chromosomeChr07:15486557..15486707 +
Chr07chromosomeChr07:15680792..15680946 +
Chr01chromosomeChr01:11553375..11553517 +
Chr01chromosomeChr01:11422708..11422848 +
F07chromosomeF07:13446650..13446808 +
Chr07chromosomeChr07:24365952..24366114 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A130NAU751View
2H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A27.5NAU751View
3LMY22 x LY343, RIL (2020)D07N/A151.29NAU751View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A83.11NAU0751View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A37.77NAU0751View
6AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A88NAU0751View
7LMY22 x LY343, RIL (2016)chr.16N/A116.5NAU0751View
8TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A62.3NAU751-400View
9TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A60.89NAU751-400View
10H16 x T586, F2 (2009)AD_ch16_Dt.07N/A61NAU751-400View
11TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A70.4NAU751-400View
Sequence
>NAU0751 ID=NAU0751; Name=NAU0751; organism=Gossypium arboreum; type=genetic_marker; length=155bp
AATGCCACGGAGTACAATTTGCAAACGCTCGGTAATGGCTACCGACATAG
ATTTAAATGTAACAGAAAACATATATATATATATATATATGTGTGTGTGT
GTACAAGTTTATGCCTCTCTCTCTCTCTGTCTAATTTTCAACTTCCACTC
TTGCA