NAU0748, NAU0748 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0748
AliasNAU748
Genbank IDBQ415464
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CATGGA)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU748_F: TTTTGGACCTGAAACATTGA
Primer 2NAU748_R: TGTTGATAATCGTCGTCGTC
Product Length225
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ415464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A10chromosomeA10:45662912..45663135 +
D13chromosomeD13:11987290..11987513 -
CM018227.1chromosomeCM018227.1:11235487..11235709 -
CM018214.1chromosomeCM018214.1:9858240..9858463 -
D5_13chromosomeD5_13:11144568..11144791 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:13828111..13828335 +
D10_13chromosomeD10_13:11228072..11228288 -
CM016626.1chromosomeCM016626.1:47652315..47652535 +
scaffold684.1supercontigscaffold684.1:244499..244722 -
Dt_chr13chromosomeDt_chr13:47619889..47620112 -
scaffold3432_A13supercontigscaffold3432_A13:802008..802231 -
D13chromosomeD13:11570467..11570690 -
Ghir_D13chromosomeGhir_D13:11547412..11547634 -
Ghir_A13chromosomeGhir_A13:9810023..9810246 -
D13chromosomeD13:11294494..11294717 -
A13chromosomeA13:10061694..10061917 -
D13chromosomeD13:11769750..11769973 -
A13chromosomeA13:9780647..9780870 -
D13chromosomeD13:11445670..11445899 -
A13chromosomeA13:9967677..9967900 -
Dt13chromosomeDt13:11778462..11778684 -
scaffold7851supercontigscaffold7851:153948..154170 +
scaffold14230supercontigscaffold14230:132558..132780 -
Gbar_D13chromosomeGbar_D13:11435910..11436132 -
Gbar_A13chromosomeGbar_A13:9784836..9785059 -
D13chromosomeD13:10833014..10833236 -
A13chromosomeA13:9938054..9938277 -
CM017635.1chromosomeCM017635.1:11301924..11302147 -
CM017622.1chromosomeCM017622.1:9884993..9885213 -
CM017661.1chromosomeCM017661.1:11844719..11844942 -
CM017648.1chromosomeCM017648.1:10497351..10497574 -
CM017713.1chromosomeCM017713.1:11439278..11439500 -
CM017700.1chromosomeCM017700.1:9848030..9848253 -
D13chromosomeD13:11940272..11940495 -
A13chromosomeA13:10520652..10520875 -
Chr13chromosomeChr13:13616689..13616912 +
Chr13chromosomeChr13:14251899..14252123 +
Chr13chromosomeChr13:11055757..11055980 -
B_13chromosomeB_13:81994930..81995153 -
Chr13chromosomeChr13:11563998..11564218 -
chr13chromosomechr13:9365118..9365341 -
Chr_13chromosomeChr_13:9502501..9502717 -
Chr13chromosomeChr13:11764647..11764868 -
Chr13chromosomeChr13:9728857..9729080 -
Chr13_3398485chromosomeChr13_3398485:4445..4668 -
Chr13chromosomeChr13:9499059..9499282 -
E13chromosomeE13:14926168..14926391 +
F13chromosomeF13:12118828..12119050 +
Chr13chromosomeChr13:144129327..144129550 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch18_Dt.13N/A35.3NAU0748View
2GX1135 x VGX100-2, RIL (2016)AD_ch01_At.01N/A290.3NAU0748View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch18_Dt.13N/A82.5NAU0748View
4PD6992 x SM3, F2:3 (2005)AD_ch18_Dt.13N/A0NAU748View
5W10 x TM-1, F2:3 (2015)AD_ch18_Dt.13N/A0NAU748View
6GX1135 x GX100-2, F2 (2013)AD_ch18_Dt.13N/A28.6NAU748View
7GX1135 x GX100-2, RIL (2015)AD_ch18_Dt.13N/A107.6NAU748View
8GX1135 x GX100-2, RIL (2016)AD_ch18_Dt.13N/A107.6NAU748View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A41.72NAU0748View
Sequence
>NAU0748 ID=NAU0748; Name=NAU0748; organism=Gossypium arboreum; type=genetic_marker; length=225bp
TTTTGGACCTGAAACATTGACCCTAAACAATGTTACTTCTTCTCCAAATT
CTCCTATAAATTGTCCAACCACGCCACTTGCTCTTCAAGCCTTAATTTCC
ACCTTACTCAAAACTTCTCTTTTTCCCATGGACATGGACATGGACTATGA
AAACGATGGCTTCTATGCTGAAATTAAAAGACAGATTCTACTTTTAACAG
CTGAAGACGACGACGATTATCAACA