MUSS0422, MUSS0422 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0422
AliasMUSS422
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifGT(6)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS422_F: tggttttgcccatctttacg
Primer 2MUSS422_R: GAAAGGGAAGATGAGGAGGG
Product Length188
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A36.41MUSS422aView
2TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A64.26MUSS422aView
3TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A55.5MUSS422aView
4Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A104.32MUSS422bView
5TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A62.27MUSS422bView
6TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A82.1MUSS422bView
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A68.85MUSS422View
8Guazuncho-2 x VH8-4602, RIL (2009)AD_ch01_At.01N/A56.96MUSS422View
9Guazuncho-2 x VH8-4602, RIL (2009)AD_ch15_Dt.01N/A39.45MUSS422View
10TM-1 x 3-79, RIL (2006)AD_ch01_At.01N/A39.9MUSS422View
11Guazuncho-2 x VH8-4602, consensus (2009)AD_ch01_At.01N/A70.97MUSS422View
12GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A62.6MUSS422View
13GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A120.4MUSS422View
140-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A16.5MUSS422View
15CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A84MUSS422View
160-153 x sGK9708, RIL (2017)AD_ch01_At.01N/A69.28MUSS422View
17AD-genome wide Reference Map (2009)AD_ch01_At.01N/A66muss0422View
18AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A89muss0422View
19TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A82.11MUSS422bView
20TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A55.48MUSS422aView
21MGG-293-793, MAGIC (2018)AD_ch01_At.01N/A95.1MUSS422aView
22MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A115.6MUSS422bView
Sequence
>MUSS0422 ID=MUSS0422; Name=MUSS0422; organism=Gossypium arboreum; type=genetic_marker; length=188bp
TGGTTTTGCCCATCTTTACGTATTTCCGGGACCGAATCAAACCCAGCAGG
CAGCAGGCAGCAGGCAGCAGGCAAAGAGAGAGAGTGTGTGTGTGTTTCTC
ACCTTACCTTAAAATATATTAACAATTTTTTTAAAATGACGGTTTCAATA
TTTTATAACATTCCATCACCCTCCTCATCTTCCCTTTC