|
Marker Overview
Name | MUSS0172 |
Alias | MUSS172
|
Genbank ID | N/A |
Type | SSR |
Species | Gossypium arboreum |
Germplasm | AKA 8401 |
Source Type | EST |
Repeat Motif | CTT(7) |
PCR Condition | Annealing temperature: 55 |
Primer 1 | MUSS172_F: TTTCTATCCCACCATTTTCCC |
Primer 2 | MUSS172_R: GTGTTTGTGTCACTGTGCCG |
Product Length | 223 |
Polymorphism | P_ MUSS0172 |
Contact | Ulloa, Mauricio
|
Comment | Primer data obtained in 2007-11 |
Alignments
The following features are aligned
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 97.46 | MUSS172 | View |
2 | TM-1 x 3-79, RIL (2006) | AD_ch03_At.03 | N/A | 65.7 | MUSS172 | View |
3 | TM-1 x 3-79, RIL (2012) | AD_ch03_At.03 | N/A | 57.45 | MUSS172 | View |
4 | Yumian-1 x T586, F2:7 (2008) | AD_ch03_At.03 | N/A | 34.5 | MUSS172 | View |
5 | Yumian-1 x T586, RIL (2006) | AD_ch03_At.03 | N/A | 35.3 | MUSS172 | View |
6 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch03_At.03 | N/A | 41.6 | MUSS172 | View |
7 | Yumian-1 x T586, RIL (2015) | AD_ch03_At.03 | N/A | 60.3 | MUSS172 | View |
8 | Yumian-1 x 7235, RIL (2015) | AD_ch03_At.03 | N/A | 76.8 | MUSS172 | View |
9 | TM-1 x 3-79, RIL (2014) | AD_ch03_At.03 | N/A | 58.9 | MUSS172 | View |
10 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch03_At.03 | N/A | 89.6 | MUSS172 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 110 | muss0172 | View |
12 | Yumian-1 x T586, RIL (2009) | AD_ch03_At.03 | N/A | 36.4 | MUSS172/200y(C3) | View |
13 | TM-1 x 3-79, RIL (2012.v3) | AD_ch03_At.03 | N/A | 58.92 | MUSS172 | View |
Sequence
>MUSS0172 ID=MUSS0172; Name=MUSS0172; organism=Gossypium arboreum; type=genetic_marker; length=223bp TTTCTATCCCACCATTTTCCCTTTTTTTTTGTTTTCTAAAACATGGCCAA CACACTACTTCACAAACCTCTCATTACCTTCTTCTTCTTTTTCTTCTTCA GCTTATTTATTCAAACCAAGCAAGATAACCCATGTCCGTATCCATGTTAC CCACCACCAACAGGCAGCGGCGGCGGAGGCGAAGGTGGAGGCGGCGGCGG CGGCGGCACAGTGACACAAACAC
|