MUSS0107, MUSS0107 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0107
AliasMUSS107
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifGAC(6)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS107_F: GCTAGATCGATTGCTAACTCGC
Primer 2MUSS107_R: ATGATGAATGGGAATGAGAAGG
Product Length177
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:3180351..3180480 +
A02chromosomeA02:86984844..86984976 -
CM018217.1chromosomeCM018217.1:2918832..2918961 +
CM018203.1chromosomeCM018203.1:96612496..96612628 -
D5_02chromosomeD5_02:2904166..2904295 +
KI_06chromosomeKI_06:42739781..42739916 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:2893889..2894021 +
D10_02chromosomeD10_02:2864636..2864765 +
CM016615.1chromosomeCM016615.1:4166293..4166428 +
scaffold712.1supercontigscaffold712.1:665609..665738 +
scaffold3246.1supercontigscaffold3246.1:8493..8625 +
D03chromosomeD03:2943956..2944085 +
scaffold21468supercontigscaffold21468:90..222 -
A02chromosomeA02:80354194..80354326 -
Ghir_D03chromosomeGhir_D03:3033947..3034076 +
Ghir_A02chromosomeGhir_A02:104788354..104788486 -
D03chromosomeD03:2976495..2976624 +
A02chromosomeA02:105046794..105046926 -
D03chromosomeD03:3042172..3042301 +
A02chromosomeA02:102424250..102424382 -
D03chromosomeD03:3038239..3038368 +
A02chromosomeA02:101042252..101042384 -
At02chromosomeAt02:85724782..85724914 -
scaffold4125supercontigscaffold4125:916..1045 -
scaffold2476supercontigscaffold2476:98494..98626 -
Gbar_D03chromosomeGbar_D03:2926940..2927069 +
Gbar_A02chromosomeGbar_A02:96779844..96779976 -
D03chromosomeD03:2965819..2965948 +
A02chromosomeA02:98803373..98803505 -
CM017625.1chromosomeCM017625.1:2955649..2955778 +
CM017611.1chromosomeCM017611.1:101663259..101663391 -
CM017651.1chromosomeCM017651.1:3060640..3060775 +
CM017637.1chromosomeCM017637.1:106489897..106490029 -
CM017703.1chromosomeCM017703.1:2943186..2943315 +
CM017689.1chromosomeCM017689.1:98978314..98978446 -
D03chromosomeD03:3146468..3146597 +
A02chromosomeA02:104890678..104890810 -
Chr02chromosomeChr02:89228229..89228361 -
Chr02chromosomeChr02:98824506..98824638 -
Chr02chromosomeChr02:2783115..2783244 +
B_04chromosomeB_04:70502733..70502865 -
Chr03chromosomeChr03:2870665..2870794 +
chr03chromosomechr03:2759656..2759785 +
Chr03_2119213chromosomeChr03_2119213:30..159 +
Chr03chromosomeChr03:3000522..3000651 +
Chr03chromosomeChr03:2256713..2256842 +
Chr03chromosomeChr03:2061885..2062014 +
Chr03chromosomeChr03:2544611..2544740 +
E02chromosomeE02:3957533..3957659 +
F02chromosomeF02:2886891..2887023 +
Chr02chromosomeChr02:135739767..135739899 -
Chr03chromosomeMUSS0107:16..702 .
Chr03:2911471..2912903 +
Chr7chromosomeMUSS0107:16..702 .
Chr7:49037866..49039298 +
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A48MUSS107View
2Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A108.2MUSS107View
30-153 x sGK9708, RIL (2016)AD_ch02_At.02N/A0MUSS107View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A35.3MUSS107View
50-153 x sGK9708, RIL (2017)AD_ch02_At.02N/A16.05MUSS107View
6Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A45.2MUSS107/130yView
7CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A83.6MUSS107View
Sequence
>MUSS0107 ID=MUSS0107; Name=MUSS0107; organism=Gossypium arboreum; type=genetic_marker; length=133bp
GCTAGATCGATTGCTAACTCGCTCAAGCTTGACGACGACGACGACGACGA
TCGGACCAATGCGGCGCTGGATCCGAAACCCGAATCCGATCCGAATCCTA
ACCAAGCCTCTCCTTCTCATTCCCATTCATCAT