MUSS0073, MUSS0073 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0073
AliasMUSS073
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTTTTA(3)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS073_F: TCTCCATGAAACCAAACAAACC
Primer 2MUSS073_R: TTAATGCTATTTTCTCCGTCGC
Product Length217
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:9263099..9263297 +
A02chromosomeA02:77974133..77974346 -
CM018217.1chromosomeCM018217.1:8838155..8838352 +
CM018203.1chromosomeCM018203.1:88505143..88505373 -
D5_02chromosomeD5_02:8073057..8073254 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:13075073..13075286 +
At_chr9chromosomeAt_chr9:21616682..21616895 +
At_chr3chromosomeAt_chr3:46352516..46352729 +
Dt_chr3chromosomeDt_chr3:26669527..26669787 -
D03chromosomeD03:8895567..8895780 +
A02chromosomeA02:71758948..71759161 -
Ghir_D03chromosomeGhir_D03:9009091..9009289 +
Ghir_A02chromosomeGhir_A02:95845058..95845271 -
D03chromosomeD03:8722561..8722759 +
A02chromosomeA02:96516987..96517200 -
D03chromosomeD03:9053550..9053748 +
A02chromosomeA02:93924860..93925073 -
D03chromosomeD03:8875236..8875435 +
A02chromosomeA02:92255900..92256114 -
Dt03chromosomeDt03:10896692..10896889 +
scaffold8090supercontigscaffold8090:79926..80123 +
scaffold1470supercontigscaffold1470:320925..321155 +
scaffold1470supercontigscaffold1470:315706..315936 +
Gbar_D03chromosomeGbar_D03:8858402..8858596 +
Gbar_A02chromosomeGbar_A02:88573692..88573922 -
D03chromosomeD03:8938267..8938611 +
A02chromosomeA02:90683691..90683920 -
CM017625.1chromosomeCM017625.1:8882811..8883006 +
CM017611.1chromosomeCM017611.1:92534390..92534601 -
CM017637.1chromosomeCM017637.1:97840986..97841201 -
CM017703.1chromosomeCM017703.1:8979285..8979480 +
CM017689.1chromosomeCM017689.1:90433381..90433611 -
D03chromosomeD03:9167613..9167811 +
A02chromosomeA02:96066413..96066626 -
Chr02chromosomeChr02:79428398..79428612 -
Chr02chromosomeChr02:88873147..88873360 -
Chr02chromosomeChr02:8713505..8713703 +
B_04chromosomeB_04:61896658..61896874 -
Chr03chromosomeChr03:8754162..8754356 +
Chr_03chromosomeChr_03:5795052..5795304 +
Chr03chromosomeChr03:9188181..9188378 +
Chr03chromosomeChr03:6062938..6063131 +
Chr03chromosomeChr03:5372243..5372449 +
Chr03chromosomeChr03:6841378..6841642 +
E02chromosomeE02:14698574..14698777 +
F02chromosomeF02:10546343..10546549 +
Chr02chromosomeChr02:119976931..119977138 -
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A80.74MUSS073View
2TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A52.3MUSS073View
3Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A11.2MUSS073View
4Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A69.3MUSS073View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A51.9MUSS073View
6AD-genome wide Reference Map (2009)AD_ch02_At.02N/A64muss0073View
7TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A51.92MUSS073bView
8TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A52.7MUSS073bView
9TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A67.86MUSS073aView
10TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A50.4MUSS073aView
11Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A82MUSS073/200yView
12CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A65.31MUSS073View
13TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A52.73MUSS073bView
14TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A50.41MUSS073aView
Sequence
>MUSS0073 ID=MUSS0073; Name=MUSS0073; organism=Gossypium arboreum; type=genetic_marker; length=217bp
TCTCCATGAAACCAAACAAACCTTTACAACTTAATACTTGCACAATCAAG
CTCAGCTCAAAAACAAGCTCTACTAAAATCAAGAAAGTATCGCTCTTATT
TTTATTTTATTTTATTTTTTTGGGGGGGGGGGGAGAATTTATTAGAAAAT
CATGAAAATAGAAAAAAGTTGAAAGAGTAAAAGTAGCACCTATTGGCGAC
GGAGAAAATAGCATTAA