MUSB1316, MUSB1316 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1316
Genbank IDDX562023
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX562023.2
Source TypeEST
Repeat Motif(ATAAA)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1316_F: GCCTCAGACTTGACCATTCAGG
Primer 2MUSB1316_R: CCCGAAAACTTTGCCCAAACC
Product Length326
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1316
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX562023
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX562023.2DX562023.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_chUN/A9.2MUSB1316View
2TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A185.07MUSB1316View
3TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A7.8MUSB1316View
4TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A7.75MUSB1316View
Sequence
>MUSB1316 ID=MUSB1316; Name=MUSB1316; organism=Gossypium hirsutum; type=genetic_marker; length=326bp
GCCTCAGACTTGACCATTCAGGGCCCAAGTTTGATTCGGCCCATTTTTAA
GTTTATAATATTTTATATTATGTTATTTTTATACATTATGGAATTTAGAA
CATATTAAAAAATTAAACCCATATTAAATATATAATGCTATCTAATGTAA
ACATTAAAATAATGTTAAGATGACTAAATAAAAAATTTTAATAAATAAAA
AATGTATAAAATAAAATAAAATAAAATAAATATTTTTAAAAAAATTAAAA
AATAATATGGTTGGACATAAAATAAACTTAGATTAGTCTTTTGCAAATAT
AGGCGGGTTTGGGCAAAGTTTTCGGG