MUSB1197, MUSB1197 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	MUSB1197
Genbank ID	DX537815
Type	SSR
Species	Gossypium hirsutum
Germplasm	Acala Maxxa
Source Sequence	DX537815.2
Source Type	EST
Repeat Motif	(AT)7
PCR Condition	Annealing temperature: 50
Primer 1	MUSB1197_F: ACTGCCGTCACTTAGCAGC
Primer 2	MUSB1197_R: GGCAAGATAGAGATGCATGTGACG
Product Length	349
Restriction Enzyme	HindIII; NotI
Polymorphism	P_ MUSB1197
Publication	[view all]
Comment	Primer data obtained in 2006

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DX537815

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A11	chromosome	A11:4233417..4233765 -
CM018212.1	chromosome	CM018212.1:4401728..4402080 -
CM016624.1	chromosome	CM016624.1:5332650..5333003 -
A11	chromosome	A11:3998366..3998714 -
Ghir_A11	chromosome	Ghir_A11:4519440..4519788 -
A11	chromosome	A11:4334448..4334796 -
A11	chromosome	A11:4400851..4401199 -
A11	chromosome	A11:4552486..4552834 -
At11	chromosome	At11:4652677..4653027 -
scaffold14328	supercontig	scaffold14328:14704..15054 -
Gbar_A11	chromosome	Gbar_A11:4194211..4194563 -
A11	chromosome	A11:4456448..4456800 -
CM017620.1	chromosome	CM017620.1:4543419..4544362 -
CM017698.1	chromosome	CM017698.1:4473192..4473546 -
A11	chromosome	A11:4614116..4614464 -
Chr11	chromosome	Chr11:4576672..4577023 -
Chr11	chromosome	Chr11:4434342..4434696 -
F11	chromosome	F11:3815501..3815856 -

Publications


Year	Publication
2006	Frelichowski JJ, Palmer M, Main D, Tomkins J, Cantrell R, Stelly D, Yu J, Kohel R, Ulloa M. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Molecular genetics and genomics MGG. 2006; 275(5):479-491.

Germplasm


Stock Name	Type
Acala Maxxa	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DX537815.2	DX537815.2	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch21_Dt.11	N/A	51.57	MUSB1197	View
2	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch21_Dt.11	N/A	146.37	MUSB1197	View
3	TM-1 x 3-79, RIL (2006)	AD_ch11_At.11	N/A	0	MUSB1197	View
4	TM-1 x 3-79, RIL (2012)	AD_ch21_Dt.11	N/A	34.09	MUSB1197	View
5	AD-genome wide Reference Map (2009)	AD_ch21_Dt.11	N/A	106	MUSB1197	View
6	DH962 x Jinmian-6, F2 (2009)	AD_chU	N/A	103.3	MUSB1197	View
7	DH962 X Ji Mian 5, F2 (2015)	AD_ch21_Dt.11	N/A	42.01	MUSB1197	View
8	TM-1 x 3-79, RIL (2014)	AD_ch21_Dt.11	N/A	33.7	MUSB1197	View
9	DH962 x Ji Mian 5, RIL (2015)	AD_ch15_Dt.01	N/A	22	MUSB1197	View
10	GB713 x Nem-X, F2 (2011)	AD_ch21_Dt.11	N/A	61.7	MUSB1197_315	View
11	TM-1 x 3-79, RIL (2012.v3)	AD_ch21_Dt.11	N/A	33.65	MUSB1197	View

Sequence

>MUSB1197 ID=MUSB1197; Name=MUSB1197; organism=Gossypium hirsutum; type=genetic_marker; length=349bp
ACTGCCGTCACTTAGCAGCCTCTTCCTTTTTTTTCTTTTTCAAGAAAAAA
GCAGAAATTAATATTTAATTGTAAAAGTCCTAGTTCAAGTCTCCTCATCT
ACATCTTTTATCTTAAAAAATATATATATATATTTAAATTTAATTATAAA
AATATAAATATAAACAAATAGTGGTCATATTAAATAATAGTCAGGCTTGG
GTAAACTAAAACTAAATCAATCAAACATTTTTGTAACGCTTTATTTCTGG
AGAAATTATTACCACGTTAAATATGGTCCTTTCCAATAGTAAGTGTTTTT
TACATGTCAGTCCTTATTTCTAATTCGTCACATGCATCTCTATCTTGCC

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MUSB1197, MUSB1197 (genetic_marker) Gossypium hirsutum