MUSB1138, MUSB1138 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1138
Genbank IDDX529607
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX529607.2
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1138_F: AGCATAGGAGAGACCCACGTT
Primer 2MUSB1138_R: CCGTGCATCTTTAAGCAGGAGG
Product Length135
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1138
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX529607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:64321044..64321178 +
A08chromosomeA08:118492804..118492938 +
CM018222.1chromosomeCM018222.1:60539775..60539909 +
CM018209.1chromosomeCM018209.1:113496215..113496349 +
D5_08chromosomeD5_08:56731773..56731907 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:123522549..123522683 +
D10_08chromosomeD10_08:4631253..4631387 -
CM016621.1chromosomeCM016621.1:7188615..7188749 -
At_chr1chromosomeAt_chr1:51716080..51716214 +
scaffold862.1supercontigscaffold862.1:368867..369001 -
scaffold1930_A08supercontigscaffold1930_A08:42720..42854 +
D08chromosomeD08:61058957..61059091 +
Ghir_D08chromosomeGhir_D08:63519104..63519238 +
Ghir_A08chromosomeGhir_A08:117008379..117008513 +
D08chromosomeD08:63944178..63944312 +
A08chromosomeA08:119670371..119670505 +
D08chromosomeD08:63355122..63355256 +
A08chromosomeA08:119844575..119844709 +
D08chromosomeD08:60648025..60648159 +
A08chromosomeA08:115592260..115592394 +
Dt08chromosomeDt08:63399368..63399502 +
scaffold39623supercontigscaffold39623:7359..7526 +
scaffold13364supercontigscaffold13364:119243..119377 +
Gbar_D08chromosomeGbar_D08:60658510..60658644 +
Gbar_A08chromosomeGbar_A08:114128181..114128315 +
D08chromosomeD08:62524701..62524835 +
A08chromosomeA08:115157484..115157618 +
CM017630.1chromosomeCM017630.1:62255913..62256047 +
CM017617.1chromosomeCM017617.1:113745953..113746087 +
CM017656.1chromosomeCM017656.1:64413842..64413978 +
CM017643.1chromosomeCM017643.1:123225268..123225402 +
CM017708.1chromosomeCM017708.1:60947395..60947529 +
CM017695.1chromosomeCM017695.1:114360548..114360682 +
D08chromosomeD08:64141056..64141190 +
A08chromosomeA08:121709908..121710042 +
Chr08chromosomeChr08:125990827..125990965 +
Chr08chromosomeChr08:126973572..126973706 +
Chr08chromosomeChr08:57643231..57643367 +
B_08chromosomeB_08:98610636..98610770 +
Chr04chromosomeChr04:59076922..59077056 +
chr04chromosomechr04:44539625..44539759 +
Chr_04chromosomeChr_04:41411872..41412006 +
Chr04chromosomeChr04:61485013..61485151 +
Chr04chromosomeChr04:39034202..39034338 +
Chr04chromosomeChr04:32922931..32923069 +
Chr04chromosomeChr04:39978748..39978884 +
E08chromosomeE08:115929574..115929710 +
F08chromosomeF08:99857464..99857600 +
Chr08chromosomeChr08:7670774..7670908 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX529607.2DX529607.2Gossypium hirsutumsequence_feature


Sequence
>MUSB1138 ID=MUSB1138; Name=MUSB1138; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
AGCATAGGAGAGACCCACGTTTATTAGATTGAATGAAAATGCATGGTAAC
GAAAATATATATATTATGAAAATGCATGGTAGAAAGATATTCTACAATGC
TTTAAGAATTTTGCCTCCTGCTTAAAGATGCACGG