MUSB1127, MUSB1127 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1127
Genbank IDDX555753
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX555753.2
Source TypeEST
Repeat Motif(TAT)7
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1127_F: GGTCCCTCTTGGTGCTGTG
Primer 2MUSB1127_R: TTTTGGGCTAAGGGTTTTGGGT
Product Length350
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1127
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX555753
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX555753.2DX555753.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_ch10_At.10N/A23.2musb1127View
2AD-genome wide Reference Map (2009)AD_ch10_At.10N/A170musb1127View
3TM-1 x 3-79, RIL (2012)AD_ch10_At.10N/A46.64musb1127View
4TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A50.8musb1127View
5TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A50.8MUSB1127View
Sequence
>MUSB1127 ID=MUSB1127; Name=MUSB1127; organism=Gossypium hirsutum; type=genetic_marker; length=350bp
GGTCCCTCTTGGTGCTGTGCATTTTGGGAGGATGGGATATTGCCCATTTT
GGTCCTCCCTTGTTATCCGAGAGCCCAAATTGGTCCTATTTTTTGTTTTT
TTATTTCGAATTGGCCCCGAAATTTCATTTTAGGTTCAATTTAGTCATTT
TTTTGTTATTTTCAATATTTTAATTAAATTAATTAAATTAATATATTATT
ATTACTTATTATATTATTATTATTATTATTATCACTATTATTATTGTATG
GCCCAAATTTTGCCTGGGGCCCAATAAAACCAAATCCAAATAAACATAAC
TCAACTACCCAATTAAAACCCAATACAAACCCAAAACCCTTAGCCCAAAA