MUSB0915, MUSB0915 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0915
Genbank IDDX556521
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX556521
Source TypeEST
Repeat Motif(ATTT)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0915_F: AGCTGAGGATTCTGGGCTTTG
Primer 2MUSB0915_R: GCCTGGTCTTGTGGTTCCA
Product Length258
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0915
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX556521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:69607223..69607480 +
A02chromosomeA02:46197220..46197477 +
A13chromosomeA13:25769174..25769431 -
CM018203.1chromosomeCM018203.1:79582153..79582410 +
CM018203.1chromosomeCM018203.1:44299127..44299380 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:24536469..24536726 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:22888310..22888567 -
scaffold2212.1supercontigscaffold2212.1:39728..39985 +
At_chr3chromosomeAt_chr3:98218231..98218488 -
At_chr13chromosomeAt_chr13:40161479..40161736 -
A02chromosomeA02:65581280..65581537 +
A02chromosomeA02:43212502..43212759 +
A13chromosomeA13:21276254..21276511 -
Ghir_A02chromosomeGhir_A02:86891726..86891983 +
Scaffold2162supercontigScaffold2162:31396..31653 -
Ghir_A13chromosomeGhir_A13:21576243..21576500 -
A02chromosomeA02:87114691..87114948 +
A02chromosomeA02:45357255..45357512 +
A13chromosomeA13:22033351..22033608 -
A02chromosomeA02:84852687..84852944 +
A02chromosomeA02:45702539..45702796 +
A13chromosomeA13:21565591..21565848 -
A02chromosomeA02:83488917..83489174 +
A02chromosomeA02:45153676..45153933 +
A13chromosomeA13:22126748..22127005 -
scaffold1611supercontigscaffold1611:422418..422675 +
scaffold12918supercontigscaffold12918:161271..161524 -
Gbar_A02chromosomeGbar_A02:80093398..80093655 +
Gbar_A02chromosomeGbar_A02:44797881..44798134 +
A02chromosomeA02:81792382..81792639 +
A02chromosomeA02:45266864..45267117 +
CM017611.1chromosomeCM017611.1:83541326..83541583 +
CM017611.1chromosomeCM017611.1:44570007..44570264 +
CM017622.1chromosomeCM017622.1:22262780..22263037 -
CM017637.1chromosomeCM017637.1:88275073..88275330 +
CM017637.1chromosomeCM017637.1:47773470..47773727 +
CM017648.1chromosomeCM017648.1:23966887..23967144 -
CM017689.1chromosomeCM017689.1:81479569..81479826 +
CM017689.1chromosomeCM017689.1:45052739..45052992 +
A02chromosomeA02:86760529..86760786 +
A02chromosomeA02:46608407..46608664 +
A13chromosomeA13:22932883..22933140 -
Chr02chromosomeChr02:69928032..69928289 +
Chr02chromosomeChr02:30033102..30033359 +
Chr13chromosomeChr13:22793958..22794215 -
Chr02chromosomeChr02:78916522..78916779 +
Chr13chromosomeChr13:24027351..24027608 -
B_12chromosomeB_12:5254905..5255163 +
B_05chromosomeB_05:16663339..16663596 +
B_03chromosomeB_03:80980307..80980564 +
B_02chromosomeB_02:24428150..24428408 +
B_01chromosomeB_01:81347135..81347386 +
B_06chromosomeB_06:19819396..19819652 -
F03chromosomeF03:20008643..20008903 -
F02chromosomeF02:11329365..11329621 -
F01chromosomeF01:91378403..91378660 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX556521DX556521Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A45.8MUSB0915View
2TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A61.54MUSB0915View
3Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A84.13MUSB0915View
4AD-genome wide Reference Map (2009)AD_ch02_At.02N/A105MUSB0915View
5TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A62.5MUSB0915View
6TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A62.47MUSB0915View
Sequence
>MUSB0915 ID=MUSB0915; Name=MUSB0915; organism=Gossypium hirsutum; type=genetic_marker; length=258bp
AGCTGAGGATTCTGGGCTTTGATTAATTTATTTATTTCTACTCTGTTGAT
GAGAAGTTGTTTATCCATTTATGGGGTTCTGATTTCTAATGTGTAAAATG
TAAAAAAGTGAAAACCTTTTGCTCAGTTTAACAACTATTTGGAATTGTAA
GAAAAAAGGGTATTCTTTGTTTTCTTAGGGATAATGTGAATAAGAGCTGT
AAGATGCCTTAGGGATAATACTAAACCTACCATGGAAAGTGGAACCACAA
GACCAGGC