MUSB0888, MUSB0888 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0888
Genbank IDDX524238
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX524238.2
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0888_F: ACTTACTTGCCGTACTCGGAGG
Primer 2MUSB0888_R: TGGTTCCACACCTGCAGAG
Product Length350
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0888
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX524238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:3839647..3839992 +
A02chromosomeA02:76182667..76183016 +
CM018206.1chromosomeCM018206.1:3772642..3772987 +
CM018203.1chromosomeCM018203.1:86907376..86907719 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3732887..3733232 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3715217..3715562 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:14762458..14762804 -
At_chr9chromosomeAt_chr9:50947499..50947844 +
At_chr3chromosomeAt_chr3:68271128..68271477 +
scaffold39.1supercontigscaffold39.1:140490..140914 -
A05chromosomeA05:3361137..3361482 +
A02chromosomeA02:70167497..70167846 +
Ghir_A05chromosomeGhir_A05:3843321..3843666 +
Ghir_A02chromosomeGhir_A02:94390027..94390376 +
A05chromosomeA05:3723634..3723979 +
A02chromosomeA02:94949438..94949787 +
A05chromosomeA05:3816865..3817210 +
A02chromosomeA02:92350469..92350818 +
A05chromosomeA05:4222341..4222686 +
A02chromosomeA02:90672944..90673293 +
At05chromosomeAt05:1907008..1907353 +
scaffold17586supercontigscaffold17586:117173..117518 +
scaffold3151supercontigscaffold3151:96711..97054 -
Gbar_A05chromosomeGbar_A05:3469963..3470308 +
Gbar_A02chromosomeGbar_A02:87008751..87009094 +
A05chromosomeA05:3943991..3944336 +
A02chromosomeA02:89112540..89112883 +
CM017614.1chromosomeCM017614.1:3781849..3782194 +
CM017611.1chromosomeCM017611.1:90991155..90991498 +
CM017640.1chromosomeCM017640.1:3877869..3878215 +
CM017637.1chromosomeCM017637.1:96110101..96110444 +
CM017692.1chromosomeCM017692.1:3742082..3742427 +
CM017689.1chromosomeCM017689.1:88789421..88789764 +
A05chromosomeA05:3929680..3930025 +
A02chromosomeA02:94457786..94458135 +
Chr05chromosomeChr05:4033590..4033935 +
Chr02chromosomeChr02:77683668..77684011 +
Chr01chromosomeChr01:115203308..115203740 +
Chr05chromosomeChr05:3606918..3607263 +
Chr05chromosomeChr05:3589288..3589632 +
Chr02chromosomeChr02:86911965..86912312 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX524238.2DX524238.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch02_At.02N/A55musb0888View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A100.4musb0888View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A24.4musb0888View
4TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A53.4MUSB0888aView
5TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A54.66MUSB0888aView
6TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A55.6MUSB0888aView
7TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A53.5MUSB0888bView
8TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A55.65MUSB0888aView
Sequence
>MUSB0888 ID=MUSB0888; Name=MUSB0888; organism=Gossypium hirsutum; type=genetic_marker; length=350bp
ACTTACTTGCCGTACTCGGAGGAAACGCTTCTCCTTCCACCGATGACTTG
AAGGTTATTCTCGGATCAAGTCATTTTTCTCACTCTTTTCTCTTTTACTC
GATTTGCTCTCTCTGTTTTTGAAATCTGGCGGTGCTTGTTTTCAATAATT
TTATGGTCAATTTAGCTACGGAATTTAGGGAAATTTTCCATGTAATTTTT
GTGTTTTAGCATTATTTAAGAATCAGTTCCTGTACTAAGTCTTTTATTTT
CAATTTAAAAATTCTAGTCTAGTCGATGACTTTAAAAGTATTTTCATTTT
CATTTTCATTTTTTTAAAATATATATATTATCTCTGCAGGTGTGGAACCA