MUSB0886, MUSB0886 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0886
Genbank IDDX531973
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX531973
Source TypeEST
Repeat Motif(TTA)8
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0886_F: TCGTTGCATCTGTGGTCAACAC
Primer 2MUSB0886_R: TGATGGTGACCCCAGTCTACG
Product Length201
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0886
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX531973
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:13470119..13470328 +
A11chromosomeA11:14938455..14938652 +
CM018225.1chromosomeCM018225.1:12551378..12551587 +
CM018212.1chromosomeCM018212.1:14557664..14557861 +
D5_11chromosomeD5_11:53492736..53492945 -
KI_11chromosomeKI_11:9637547..9637767 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:109090750..109090947 -
D10_11chromosomeD10_11:12271970..12272179 +
CM016624.1chromosomeCM016624.1:19211539..19211761 +
D11chromosomeD11:13047477..13047686 +
A11chromosomeA11:14658226..14658423 +
Ghir_D11chromosomeGhir_D11:13013290..13013499 +
Ghir_A11chromosomeGhir_A11:15047934..15048130 +
D11chromosomeD11:12727062..12727271 +
A11chromosomeA11:14566667..14566864 +
D11chromosomeD11:13066444..13066653 +
A11chromosomeA11:14760913..14761113 +
D11chromosomeD11:12835057..12835266 +
A11chromosomeA11:15135124..15135321 +
Dt11chromosomeDt11:14372184..14372393 +
scaffold2820supercontigscaffold2820:581831..582028 +
scaffold2820supercontigscaffold2820:585611..585820 +
scaffold2820supercontigscaffold2820:573062..573271 +
scaffold1853supercontigscaffold1853:21698..21907 +
Gbar_D11chromosomeGbar_D11:12837985..12838194 +
Gbar_A11chromosomeGbar_A11:14303395..14303592 +
D11chromosomeD11:12739957..12740166 +
A11chromosomeA11:14569342..14569539 +
CM017633.1chromosomeCM017633.1:12713287..12713496 +
CM017620.1chromosomeCM017620.1:14874998..14875195 +
CM017659.1chromosomeCM017659.1:12998031..12998240 +
CM017646.1chromosomeCM017646.1:14949286..14949483 +
CM017711.1chromosomeCM017711.1:12820824..12821033 +
CM017698.1chromosomeCM017698.1:14810895..14811092 +
D11chromosomeD11:13276590..13276799 +
A11chromosomeA11:15282756..15282953 +
Chr11chromosomeChr11:15608426..15608617 +
Chr11chromosomeChr11:15216306..15216503 +
Chr11chromosomeChr11:50986604..50986813 -
B_11chromosomeB_11:14041553..14041778 +
Chr07chromosomeChr07:12511527..12511739 +
Chr07_5048222chromosomeChr07_5048222:3306..3515 -
Chr07chromosomeChr07:12638860..12639069 +
Chr07chromosomeChr07:8851230..8851445 +
Chr07chromosomeChr07:10241756..10242553 +
F11chromosomeF11:12669136..12669385 +
Chr11chromosomeChr11:164618006..164618234 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX531973DX531973Gossypium hirsutumsequence_feature


Sequence
>MUSB0886 ID=MUSB0886; Name=MUSB0886; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
TCGTTGCATCTGTGGTCAACACTGTGTCTTCTTTGACTTTTGTGATTGCA
ATCATACTCAGGTAGATAGGACTCTTTATTCCATATCACCAATCCTTTAT
TATTATTATTATTATTATTATTTTAAATTTCTTCATGTATTTGACACAGG
ATGGAGGTAGTCGATGTAAGAAGCTGTCATCGTAGACTGGGGTCACCATC
A