MUSB0875, MUSB0875 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0875
Genbank IDDX822626
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822626.2
Source TypeEST
Repeat Motif(TTTTA)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0875_F: ACTATCACCCTTGAAAACTGAGGCT
Primer 2MUSB0875_R: AAACCACGGGCAGAGGAG
Product Length451
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0875
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822626
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:46312721..46313170 +
CM018216.1chromosomeCM018216.1:43508536..43508992 +
D5_03chromosomeD5_03:23359123..23359579 -
At_chr8chromosomeAt_chr8:74794472..74794922 +
D02chromosomeD02:43893163..43893613 +
Ghir_D02chromosomeGhir_D02:45778749..45779199 +
D02chromosomeD02:46423521..46423971 +
D02chromosomeD02:47184547..47184997 +
D02chromosomeD02:44535951..44536401 +
scaffold15235supercontigscaffold15235:84736..85192 -
Gbar_D02chromosomeGbar_D02:44152582..44153038 +
D02chromosomeD02:45416101..45416557 +
CM017624.1chromosomeCM017624.1:46270323..46270773 +
CM017650.1chromosomeCM017650.1:47462621..47463077 +
CM017702.1chromosomeCM017702.1:44936913..44937368 +
D02chromosomeD02:47931616..47932066 +
Chr03chromosomeChr03:40435909..40436364 +
Chr05chromosomeMUSB0875:1..803 .
Chr05:40853984..40854793 +
Chr13chromosomeMUSB0875:1..803 .
Chr13:32445975..32446784 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822626.2DX822626.2Gossypium hirsutumsequence_feature


Sequence
>MUSB0875 ID=MUSB0875; Name=MUSB0875; organism=Gossypium hirsutum; type=genetic_marker; length=451bp
ACTATCACCCTTGAAAACTGAGGCTAAACTTGCTTATCAAGATGTGAAGT
CTAATATTTTTACCAAACGTAACTACAACCACTAATCAAAGTGGTAAAAC
ATTTCTTGTATGCTTGGAACCAACTAAGTAGGTCATTCAACTACCTAAAC
ATAAAAAAGATGAGTAAGGTAGGTATGTAAATTGTTGATGTTAGAATTAA
GTGACCCAAATCCTTATTTAAATAAAATACTGTGGTAAAAAAAGTAAAAT
CCCTATAGAATTATACTTCTTTTATTTTATTTTAGAATTAGGTTTCTAAA
CCTTATTAAACTCCATCTATTTGATATTATTTGAATAAGGAGTTTCACTC
CTATTAGAATAAGGTTTACAAGCCTATAAATAGGCATAGTCTACTCCTCT
TGTAATTAAGTTTTTGACATAGTGAATCTTCTTCTCCTCTGCCCGTGGTT
T