MUSB0780, MUSB0780 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0780
Genbank IDDX823060
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823060
Source TypeEST
Repeat Motif(AAG)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0780_F: TGCATTCATCAAAGGTAGCC
Primer 2MUSB0780_R: TCATGCGCCTTATTCGTTTC
Product Length135
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0780
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823060
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:54487121..54487256 +
A08chromosomeA08:105191492..105191626 +
CM018222.1chromosomeCM018222.1:51139731..51139866 +
CM018209.1chromosomeCM018209.1:100736906..100737037 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:109394638..109394769 +
CM016621.1chromosomeCM016621.1:34140992..34141131 +
scaffold349.1supercontigscaffold349.1:870458..870592 +
Dt_chr10chromosomeDt_chr10:7675313..7675448 -
D08chromosomeD08:51119362..51119497 +
A08chromosomeA08:86321048..86321182 +
Ghir_D08chromosomeGhir_D08:53749292..53749427 +
Ghir_A08chromosomeGhir_A08:104497894..104498028 +
D08chromosomeD08:54614557..54614692 +
A08chromosomeA08:107642965..107643099 +
D08chromosomeD08:53643769..53643904 +
A08chromosomeA08:107313339..107313473 +
D08chromosomeD08:50934451..50934586 +
A08chromosomeA08:103366833..103366967 +
At08chromosomeAt08:90160674..90160805 +
scaffold1662supercontigscaffold1662:1910..2041 +
scaffold1195supercontigscaffold1195:153134..153269 -
Gbar_D08chromosomeGbar_D08:51103753..51103888 +
Gbar_A08chromosomeGbar_A08:101334458..101334589 +
D08chromosomeD08:53188003..53188138 +
A08chromosomeA08:102594738..102594869 +
CM017630.1chromosomeCM017630.1:52547922..52548057 +
CM017617.1chromosomeCM017617.1:100893991..100894125 +
CM017656.1chromosomeCM017656.1:54476970..54477105 +
CM017643.1chromosomeCM017643.1:110504325..110504459 +
CM017708.1chromosomeCM017708.1:51736952..51737087 +
CM017695.1chromosomeCM017695.1:101601609..101601740 +
D08chromosomeD08:54250476..54250611 +
A08chromosomeA08:109157928..109158062 +
Chr08chromosomeChr08:112521512..112521646 +
Chr08chromosomeChr08:113453562..113453693 +
Chr04chromosomeChr04:49576236..49576371 +
chr04chromosomechr04:37059851..37060105 +
Chr_04chromosomeChr_04:33610153..33610290 +
Chr04chromosomeChr04:52040823..52040958 +
Chr04chromosomeChr04:32627049..32627184 +
Chr04chromosomeChr04:27427845..27427980 +
Chr04chromosomeChr04:32841718..32841853 +
E08chromosomeE08:100872900..100873034 +
F08chromosomeF08:88167501..88167635 +
Chr08chromosomeChr08:35677422..35677560 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823060DX823060Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch08_At.08N/A207musb0780View
2TM-1 x 3-79, RIL (2006)AD_ch08_At.08N/A25.1musb0780View
3TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A71.42musb0780View
4TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A81.3musb0780View
5TM-1 x 3-79, RIL (2011)AD_ch08_At.08N/A0MUSB0780-135/132View
6TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A81.29MUSB0780View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch24_Dt.08N/A41.5MUSB0780View
Sequence
>MUSB0780 ID=MUSB0780; Name=MUSB0780; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
TGCATTCATCAAAGGTAGCCAAATTAGTGATAATGTTGTTATGGCATTAG
AATTGCTAAATCTTATAAAAAAGAAGAAGAAGAAGGGAAAATGGTGCATA
AGTGCTCTAAAACTTGAAACGAATAAGGCGCATGA