MUSB0604, MUSB0604 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0604
Genbank IDDX822908
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822908.1
Source TypeEST
Repeat Motif(AT)6
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0604_F: ACGGGCAGTTACAAAGTTCG
Primer 2MUSB0604_R: GTCGTACGTCGTTGAATTTCC
Product Length158
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0604
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822908
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_504supercontigscaffold_504:32408..32565 +
scaffold_2461supercontigscaffold_2461:14487..14643 +
At_chr6chromosomeAt_chr6:35313093..35313250 +
scaffold6392supercontigscaffold6392:10878..11035 +
A07chromosomeA07:86997486..86997643 +
A09chromosomeA09:51056258..51056415 -
CM017618.1chromosomeCM017618.1:47209200..47209355 +
A09chromosomeA09:52168100..52168257 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822908.1DX822908.1Gossypium hirsutumsequence_feature


Sequence
>MUSB0604 ID=MUSB0604; Name=MUSB0604; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
ACGGGCAGTTACAAAGTTCGTATGAACTGTACTATGTATATTGTTAATTA
AATTGAATGTTAGTGTATGAATTTTACTGAAAATGAATTGACATATATAT
ATATGTTATTATTCAATTTATCTTGTAATGAAATGAGGGAAATTCAACGA
CGTACGAC