MUSB0430, MUSB0430 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0430
Genbank IDDX822750
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822750
Source TypeEST
Repeat Motif(ATT)4
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0430_F: TTGTTTCGAAATGTCCTCTGC
Primer 2MUSB0430_R: GATGGTGATGATAATAGGCAAGTG
Product Length194
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0430
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822750
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A10chromosomeA10:100162828..100163013 +
A05chromosomeA05:15471918..15472111 +
A07chromosomeA07:93306538..93306740 -
CM018206.1chromosomeCM018206.1:15147545..15147738 +
CM018210.1chromosomeCM018210.1:68774056..68774233 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15191732..15191925 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:16537971..16538165 -
scaffold1508.1supercontigscaffold1508.1:326695..326896 +
At_chr11chromosomeAt_chr11:3610468..3610653 +
A10chromosomeA10:89527881..89528066 +
A05chromosomeA05:13745466..13745659 +
A07chromosomeA07:77786903..77787105 -
Ghir_A05chromosomeGhir_A05:15448173..15448366 +
A10chromosomeA10:104132239..104132424 +
A08chromosomeA08:1952798..1952990 -
A10chromosomeA10:103401312..103401497 +
A05chromosomeA05:15463601..15463794 +
A07chromosomeA07:96248080..96248282 -
A10chromosomeA10:98519920..98520105 +
A05chromosomeA05:15624919..15625112 +
A07chromosomeA07:92768640..92768842 -
At05chromosomeAt05:11386534..11386727 +
scaffold256supercontigscaffold256:85154..85347 +
Gbar_A05chromosomeGbar_A05:14741792..14741985 +
Gbar_A09chromosomeGbar_A09:69276581..69276758 -
A05chromosomeA05:15378829..15379022 +
A09chromosomeA09:70748470..70748647 -
CM017619.1chromosomeCM017619.1:99194819..99195004 +
CM017614.1chromosomeCM017614.1:15174908..15175098 +
CM017640.1chromosomeCM017640.1:15401706..15401899 +
CM017692.1chromosomeCM017692.1:14978051..14978244 +
CM017696.1chromosomeCM017696.1:70775682..70775859 -
A10chromosomeA10:106470863..106471048 +
A05chromosomeA05:15728782..15728975 +
A07chromosomeA07:98425372..98425574 -
Chr05chromosomeChr05:16243147..16243340 +
Chr05chromosomeChr05:15044269..15044462 +
Chr07chromosomeChr07:101553963..101554159 -
F13chromosomeF13:67776032..67776219 +
F07chromosomeF07:47740777..47740966 +
F05chromosomeF05:6388598..6388787 +
F04chromosomeF04:82782548..82782737 +
F10chromosomeF10:23133149..23133337 -
F09chromosomeF09:64316367..64316556 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822750DX822750Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch20_Dt.10N/A22.5MUSB0430View
2Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A120.3MUSB0430View
3Yumian-1 x T586, RIL (2009)AD_ch20_Dt.10N/A91.7MUSB0430/160tView
Sequence
>MUSB0430 ID=MUSB0430; Name=MUSB0430; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
TTGTTTCGAAATGTCCTCTGCTTCTTTTTTTACTTTGTTTTATTTCTTTA
TTTTATTTCATTTCTTTTATTCTTTTATTTTATTAACATTATAATAATAA
TTATTATTATTGTAAATATCTTATTTAATAACAAATATAAATATTTACAA
TTGGACACACATATATTTTACACTTGCCTATTATCATCACCATC